Items where Author is "Farhat, MR"

Journal article

BEHRUZNIA, M., MARIN, M., WHILEY, D., FARHAT, M.R., THOMAS, J.C., DOMINGO-SANANES, M.R. and MEEHAN, C.J., 2025. The Mycobacterium tuberculosis complex pangenome is small and shaped by sub-lineage-specific regions of difference. eLife, 13: RP97870. ISSN 2050-084X

MARIN, M.G., QUINONES-OLVERA, N., WIPPEL, C., BEHRUZNIA, M., JEFFREY, B.M., HARRIS, M., MANN, B.C., ROSENTHAL, A., JACOBSON, K.R., WARREN, R.M., LI, H., MEEHAN, C.J. and FARHAT, M.R., 2025. Pitfalls of bacterial pan-genome analysis approaches: a case study of Mycobacterium tuberculosis and two less clonal bacterial species. Bioinformatics, 41 (5): btaf219. ISSN 1367-4803

GRÖSCHEL, M.I., MEEHAN, C.J., BARILAR, I., DIRICKS, M., GONZAGA, A., STEGLICH, M., CONCHILLO-SOLÉ, O., SCHERER, I.-C., MAMAT, U., LUZ, C.F., DE BRUYNE, K., UTPATEL, C., YERO, D., GIBERT, I., DAURA, X., KAMPMEIER, S., RAHMAN, N.A., KRESKEN, M., VAN DER WERF, T.S., ALIO, I., STREIT, W.R., ZHOU, K., SCHWARTZ, T., ROSSEN, J.W.A., FARHAT, M.R., SCHAIBLE, U.E., NÜBEL, U., RUPP, J., STEINMANN, J., NIEMANN, S. and KOHL, T.A., 2020. The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia. Nature Communications, 11: 2044. ISSN 2041-1723

MEEHAN, C.J., GOIG, G.A., KOHL, T.A., VERBOVEN, L., DIPPENAAR, A., EZEWUDO, M., FARHAT, M.R., GUTHRIE, J.L., LAUKENS, K., MIOTTO, P., OFORI-ANYINAM, B., DREYER, V., SUPPLY, P., SURESH, A., UTPATEL, C., VAN SOOLINGEN, D., ZHOU, Y., ASHTON, P.M., BRITES, D., CABIBBE, A.M., DE JONG, B.C., DE VOS, M., MENARDO, F., GAGNEUX, S., GAO, Q., HEUPINK, T.H., LIU, Q., LOISEAU, C., RIGOUTS, L., RODWELL, T.C., TAGLIANI, E., WALKER, T.M., WARREN, R.M., ZHAO, Y., ZIGNOL, M., SCHITO, M., GARDY, J., CIRILLO, D.M., NIEMANN, S., COMAS, I. and VAN RIE, A., 2019. Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues. Nature Reviews Microbiology, 17 (9), pp. 533-545. ISSN 1740-1526

FARHAT, M.R., FRESCHI, L., CALDERON, R., IOERGER, T., SNYDER, M., MEEHAN, C.J., DE JONG, B., RIGOUTS, L., SLOUTSKY, A., KAUR, D., SUNYAEV, S., VAN SOOLINGEN, D., SHENDURE, J., SACCHETTINI, J. and MURRAY, M., 2019. GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions. Nature Communications, 10: 2128. ISSN 2041-1723