Items where Author is "Gagneux, S"

VAN RIE, A., WALKER, T., DE JONG, B., RUPASINGHE, P., RIVIÈRE, E., DARTOIS, V., SONNENKALB, L., MACHADO, D., GAGNEUX, S., SUPPLY, P., DREYER, V., NIEMANN, S., GOIG, G., MEEHAN, C., TAGLIANI, E. and CIRILLO, D.M., 2022. Balancing access to BPaLM regimens and risk of resistance. The Lancet Infectious Diseases, 22 (10), pp. 1411-1412. ISSN 1473-3099

PEČERSKA, J., KÜHNERT, D., MEEHAN, C.J., COSCOLLÁ, M., DE JONG, B.C., GAGNEUX, S. and STADLER, T., 2021. Quantifying transmission fitness costs of multi-drug resistant tuberculosis. Epidemics, 36: 100471. ISSN 1755-4365

SANOUSSI, C.N., COSCOLLA, M., OFORI-ANYINAM, B., OTCHERE, I.D., ANTONIO, M., NIEMANN, S., PARKHILL, J., HARRIS, S., YEBOAH-MANU, D., GAGNEUX, S., RIGOUTS, L., AFFOLABI, D., DE JONG, B.C. and MEEHAN, C.J., 2021. Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv. Microbial Genomics, 7 (7). ISSN 2057-5858

COSCOLLA, M., GAGNEUX, S., MENARDO, F., LOISEAU, C., RUIZ-RODRIGUEZ, P., BORRELL, S., OTCHERE, I.D., ASANTE-POKU, A., ASARE, P., SÁNCHEZ-BUSÓ, L., GEHRE, F., SANOUSSI, C.N., ANTONIO, M., AFFOLABI, D., FYFE, J., BECKERT, P., NIEMANN, S., ALABI, A.S., GROBUSCH, M.P., KOBBE, R., PARKHILL, J., BEISEL, C., FENNER, L., BÖTTGER, E.C., MEEHAN, C.J., HARRIS, S.R., DE JONG, B.C., YEBOAH-MANU, D. and BRITES, D., 2021. Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history. Microbial Genomics, 7 (2): 000477. ISSN 2057-5858

NGABONZIZA, J.C.S., LOISEAU, C., MARCEAU, M., JOUET, A., MENARDO, F., TZFADIA, O., ANTOINE, R., NIYIGENA, E.B., MULDERS, W., FISSETTE, K., DIELS, M., GAUDIN, C., DUTHOY, S., SSENGOOBA, W., ANDRÉ, E., KASWA, M.K., HABIMANA, Y.M., BRITES, D., AFFOLABI, D., MAZARATI, J.B., DE JONG, B.C., RIGOUTS, L., GAGNEUX, S., MEEHAN, C.J. and SUPPLY, P., 2020. A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region. Nature Communications, 11: 2917.

MEEHAN, C.J., GOIG, G.A., KOHL, T.A., VERBOVEN, L., DIPPENAAR, A., EZEWUDO, M., FARHAT, M.R., GUTHRIE, J.L., LAUKENS, K., MIOTTO, P., OFORI-ANYINAM, B., DREYER, V., SUPPLY, P., SURESH, A., UTPATEL, C., VAN SOOLINGEN, D., ZHOU, Y., ASHTON, P.M., BRITES, D., CABIBBE, A.M., DE JONG, B.C., DE VOS, M., MENARDO, F., GAGNEUX, S., GAO, Q., HEUPINK, T.H., LIU, Q., LOISEAU, C., RIGOUTS, L., RODWELL, T.C., TAGLIANI, E., WALKER, T.M., WARREN, R.M., ZHAO, Y., ZIGNOL, M., SCHITO, M., GARDY, J., CIRILLO, D.M., NIEMANN, S., COMAS, I. and VAN RIE, A., 2019. Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues. Nature Reviews Microbiology, 17 (9), pp. 533-545. ISSN 1740-1526

OTCHERE, I.D., COSCOLLÁ, M., SÁNCHEZ-BUSÓ, L., ASANTE-POKU, A., BRITES, D., LOISEAU, C., MEEHAN, C., OSEI-WUSU, S., FORSON, A., LARYEA, C., YAHAYAH, A.I., BADDOO, A., ANSA, G.A., ABOAGYE, S.Y., ASARE, P., BORRELL, S., GEHRE, F., BECKERT, P., KOHL, T.A., N’DIRA, S., BEISEL, C., ANTONIO, M., NIEMANN, S., DE JONG, B.C., PARKHILL, J., HARRIS, S.R., GAGNEUX, S. and YEBOAH-MANU, D., 2018. Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. Scientific Reports, 8 (1): 11269. ISSN 2045-2322