Items where Author is "Niemann, S"

Journal article

MACHADO, E., VASCONCELLOS, S., GOMES, L., CATANHO, M., RAMOS, J., DE CARVALHO, L., GOLDENBERG, T., REDNER, P., CALDAS, P., CAMPOS, C., DALCOLMO, M., LOURENÇO, M.C., LASUNSKAIA, E., MUSSI, V., SPINASSÉ, L., VINHAS, S., RIGOUTS, L., COGNEAU, S., DE RIJK, P., UTPATEL, C., KAUSTOVA, J., VAN DER LAAN, T., DE NEELING, H., RASTOGI, N., LEVINA, K., KÜTT, M., MOKROUSOV, I., ZHURAVLEV, V., MAKHADO, N., ŽOLNIR-DOVČ, M., JANKOVIC, V., DE WAARD, J., SISCO, M.C., VAN SOOLINGEN, D., NIEMANN, S., DE JONG, B.C., MEEHAN, C.J. and SUFFYS, P., 2024. Phylogenomic and genomic analysis reveals unique and shared genetic signatures of Mycobacterium kansasii complex species. Microbial Genomics, 10 (7): 001266. ISSN 2057-5858

VAN RIE, A., WALKER, T., DE JONG, B., RUPASINGHE, P., RIVIÈRE, E., DARTOIS, V., SONNENKALB, L., MACHADO, D., GAGNEUX, S., SUPPLY, P., DREYER, V., NIEMANN, S., GOIG, G., MEEHAN, C., TAGLIANI, E. and CIRILLO, D.M., 2022. Balancing access to BPaLM regimens and risk of resistance. The Lancet Infectious Diseases, 22 (10), pp. 1411-1412. ISSN 1473-3099

SANOUSSI, C.N., COSCOLLA, M., OFORI-ANYINAM, B., OTCHERE, I.D., ANTONIO, M., NIEMANN, S., PARKHILL, J., HARRIS, S., YEBOAH-MANU, D., GAGNEUX, S., RIGOUTS, L., AFFOLABI, D., DE JONG, B.C. and MEEHAN, C.J., 2021. Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv. Microbial Genomics, 7 (7). ISSN 2057-5858

COSCOLLA, M., GAGNEUX, S., MENARDO, F., LOISEAU, C., RUIZ-RODRIGUEZ, P., BORRELL, S., OTCHERE, I.D., ASANTE-POKU, A., ASARE, P., SÁNCHEZ-BUSÓ, L., GEHRE, F., SANOUSSI, C.N., ANTONIO, M., AFFOLABI, D., FYFE, J., BECKERT, P., NIEMANN, S., ALABI, A.S., GROBUSCH, M.P., KOBBE, R., PARKHILL, J., BEISEL, C., FENNER, L., BÖTTGER, E.C., MEEHAN, C.J., HARRIS, S.R., DE JONG, B.C., YEBOAH-MANU, D. and BRITES, D., 2021. Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history. Microbial Genomics, 7 (2): 000477. ISSN 2057-5858

BATTAGLIA, S., SPITALERI, A., CABIBBE, A.M., MEEHAN, C.J., UTPATEL, C., ISMAIL, N., TAHSEEN, S., SKRAHINA, A., ALIKHANOVA, N., MOSTOFA KAMAL, S.M., BARBOVA, A., NIEMANN, S., GROENHEIT, R., DEAN, A.S., ZIGNOL, M., RIGOUTS, L. and CIRILLO, D.M., 2020. Characterization of genomic variants associated with resistance to bedaquiline and delamanid in naive Mycobacterium tuberculosis clinical strains. Journal of Clinical Microbiology, 58 (11): e01304-20. ISSN 0095-1137

GRÖSCHEL, M.I., MEEHAN, C.J., BARILAR, I., DIRICKS, M., GONZAGA, A., STEGLICH, M., CONCHILLO-SOLÉ, O., SCHERER, I.-C., MAMAT, U., LUZ, C.F., DE BRUYNE, K., UTPATEL, C., YERO, D., GIBERT, I., DAURA, X., KAMPMEIER, S., RAHMAN, N.A., KRESKEN, M., VAN DER WERF, T.S., ALIO, I., STREIT, W.R., ZHOU, K., SCHWARTZ, T., ROSSEN, J.W.A., FARHAT, M.R., SCHAIBLE, U.E., NÜBEL, U., RUPP, J., STEINMANN, J., NIEMANN, S. and KOHL, T.A., 2020. The phylogenetic landscape and nosocomial spread of the multidrug-resistant opportunist Stenotrophomonas maltophilia. Nature Communications, 11: 2044. ISSN 2041-1723

MEEHAN, C.J., GOIG, G.A., KOHL, T.A., VERBOVEN, L., DIPPENAAR, A., EZEWUDO, M., FARHAT, M.R., GUTHRIE, J.L., LAUKENS, K., MIOTTO, P., OFORI-ANYINAM, B., DREYER, V., SUPPLY, P., SURESH, A., UTPATEL, C., VAN SOOLINGEN, D., ZHOU, Y., ASHTON, P.M., BRITES, D., CABIBBE, A.M., DE JONG, B.C., DE VOS, M., MENARDO, F., GAGNEUX, S., GAO, Q., HEUPINK, T.H., LIU, Q., LOISEAU, C., RIGOUTS, L., RODWELL, T.C., TAGLIANI, E., WALKER, T.M., WARREN, R.M., ZHAO, Y., ZIGNOL, M., SCHITO, M., GARDY, J., CIRILLO, D.M., NIEMANN, S., COMAS, I. and VAN RIE, A., 2019. Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues. Nature Reviews Microbiology, 17 (9), pp. 533-545. ISSN 1740-1526

OTCHERE, I.D., COSCOLLÁ, M., SÁNCHEZ-BUSÓ, L., ASANTE-POKU, A., BRITES, D., LOISEAU, C., MEEHAN, C., OSEI-WUSU, S., FORSON, A., LARYEA, C., YAHAYAH, A.I., BADDOO, A., ANSA, G.A., ABOAGYE, S.Y., ASARE, P., BORRELL, S., GEHRE, F., BECKERT, P., KOHL, T.A., N’DIRA, S., BEISEL, C., ANTONIO, M., NIEMANN, S., DE JONG, B.C., PARKHILL, J., HARRIS, S.R., GAGNEUX, S. and YEBOAH-MANU, D., 2018. Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. Scientific Reports, 8 (1): 11269. ISSN 2045-2322

MEEHAN, C.J., MORIS, P., KOHL, T.A., PEČERSKA, J., AKTER, S., MERKER, M., UTPATEL, C., BECKERT, P., GEHRE, F., LEMPENS, P., STADLER, T., KASWA, M.K., KÜHNERT, D., NIEMANN, S. and DE JONG, B.C., 2018. The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine, 37, pp. 410-416. ISSN 2352-3964