Items where Author is "Hofreiter, M"

Journal article

BALEKA, S., HERRIDGE, V.L., CATALANO, G., LISTER, A.M., DICKINSON, M.R., DI PATTI, C., BARLOW, A., PENKMAN, K.E.H., HOFREITER, M. and PAIJMANS, J.L.A., 2021. Estimating the dwarfing rate of an extinct Sicilian elephant. Current Biology. ISSN 0960-9822

STRAUBE, N., LYRA, M.L., PAIJMANS, J.L.A., PREICK, M., BASLER, N., PENNER, J., RÖDEL, M., WESTBURY, M.V., HADDAD, C.F.B., BARLOW, A. and HOFREITER, M., 2021. Successful application of ancient DNA extraction and library construction protocols to museum wet collection specimens. Molecular Ecology Resources. ISSN 1755-098X

GURKE, M., VIDAL-GOROSQUIETA, A., PAJIMANS, J.L.A., WȨCEK, K., BARLOW, A., GONZÁLEZ-FORTES, G., HARTMANN, S., GRANDAL-D’ANGLADE, A. and HOFREITER, M., 2021. Insight into the introduction of domestic cattle and the process of Neolithization to the Spanish region Galicia by genetic evidence. PLOS ONE, 16 (4): e0249537. ISSN 1932-6203

PAIJMANS, J.L.A., BARLOW, A., BECKER, M.S., CAHILL, J.A., FICKEL, J., FÖRSTER, D.W.G., GRIES, K., HARTMANN, S., HAVMØLLER, R.W., HENNEBERGER, K., KERN, C., KITCHENER, A.C., LORENZEN, E.D., MAYER, F., OBRIEN, S.J., VON SETH, J., SINDING, M.-H.S., SPONG, G., UPHYRKINA, O., WACHTER, B., WESTBURY, M.V., DALÉN, L., BHAK, J., MANICA, A. and HOFREITER, M., 2021. African and Asian leopards are highly differentiated at the genomic level. Current Biology. ISSN 0960-9822

BARLOW, A., PAIJMANS, J.L.A., ALBERTI, F., GASPARYAN, B., BAR-OZ, G., PINHASI, R., FORONOVA, I., PUZACHENKO, A.Y., PACHER, M., DALÉN, L., BARYSHNIKOV, G. and HOFREITER, M., 2021. Middle Pleistocene genome calibrates a revised evolutionary history of extinct cave bears. Current Biology. ISSN 0960-9822

DÖPPES, D., ALBERTI, F., BARLOW, A., KRUTTER, S., FRIEDRICH, R., HOFREITER, M., LINDAUER, S., KAVCIK-GRAUMANN, N., ROSENDAHL, W. and RABEDER, G., 2021. The late pleistocene cave bear fauna of the Torrener Bärenhöhle in the northern alps (Salzburg, Austria). Historical Biology. ISSN 0891-2963

TARON, U.H., PAIJMANS, J.L.A., BARLOW, A., PREICK, M., IYENGAR, A., DRĂGUȘIN, V., VASILE, Ș., MARCISZAK, A., ROBLÍČKOVÁ, M. and HOFREITER, M., 2021. Ancient DNA from the Asiatic wild dog (Cuon alpinus) from Europe. Genes, 12 (2): 144.

YUAN, J., SHENG, G., PREICK, M., SUN, B., HOU, X., CHEN, S., TARON, U.H., BARLOW, A., WANG, L., HU, J., DENG, T., LAI, X. and HOFREITER, M., 2020. Mitochondrial genomes of Late Pleistocene caballine horses from China belong to a separate clade. Quaternary Science Reviews, 250: 106691. ISSN 0277-3791

NAITO, Y.I., MELEG, I.N., ROBU, M., VLAICU, M., DRUCKER, D.G., WISSING, C., HOFREITER, M., BARLOW, A. and BOCHERENS, H., 2020. Heavy reliance on plants for Romanian cave bears evidenced by amino acid nitrogen isotope analysis. Scientific Reports, 10 (1): 6612. ISSN 2045-2322

PAIJMANS, J.L.A., BARLOW, A., HENNEBERGER, K., FICKEL, J., HOFREITER, M. and FOERSTER, D.W.G., 2020. Ancestral mitogenome capture of the Southeast Asian banded linsang. PLoS ONE, 15 (6): e0234385. ISSN 1932-6203

LYRA, M.L., LOURENÇO, A.C.C., PINHEIRO, P.D.P., PEZZUTI, T.L., BAÊTA, D., BARLOW, A., HOFREITER, M., POMBAL, J.P., HADDAD, C.F.B. and FAIVOVICH, J., 2020. High-throughput DNA sequencing of museum specimens sheds light on the long-missing species of the Bokermannohyla claresignata group (Anura: Hylidae: Cophomantini). Zoological Journal of the Linnean Society. ISSN 0024-4082

WESTBURY, M.V., HARTMANN, S., BARLOW, A., PREICK, M., RIDUSH, B., NAGEL, D., RATHGEBER, T., ZIEGLER, R., BARYSHNIKOV, G., SHENG, G., LUDWIG, A., WIESEL, I., DALEN, L., BIBI, F., WERDELIN, L., HELLER, R. and HOFREITER, M., 2020. Hyena palaeogenomes reveal a complex evolutionary history of cross-continental gene flow between spotted and cave hyena. Science Advances, 6 (11): eaay0456. ISSN 2375-2548

XENIKOUDAKIS, G., AHMED, M., HARRIS, J.C., WADLEIGH, R., PAIJMANS, J.L.A., HARTMANN, S., BARLOW, A., LERNER, H. and HOFREITER, M., 2020. Ancient DNA reveals twenty million years of aquatic life in beavers. Current Biology, 30 (3), R110-R111. ISSN 0960-9822

BARLOW, A., HARTMANN, S., GONZALEZ, J., HOFREITER, M. and PAIJMANS, J., 2020. Consensify: a method for generating pseudohaploid genome sequences from palaeogenomic datasets with reduced error rates. Genes, 11 (1): 50. ISSN 2073-4425

YUAN, J., HOU, X., BARLOW, A., PREICK, M., TARON, U., ALBERTI, F., BASLER, N., DENG, T., LAI, X., HOFREITER, M. and SHENG, G., 2019. Molecular identification of late and terminal Pleistocene Equus ovodovi from northeastern China. PLoS ONE, 14 (5): e0216883.

SHENG, G., BASLER, N., JI, X., PAIJMANS, J.L., ALBERTI, F., PREICK, M., HARTMANN, S., WESTBURY, M.V., YUAN, J., JABLONSKI, N.G., XENIKOUDAKIS, G., HOU, X., XIAO, B., LIU, J., HOFREITER, M., LAI, X. and BARLOW, A., 2019. Paleogenome reveals genetic contribution of extinct giant panda to extant populations. Current Biology, 29 (10), pp. 1695-1700. ISSN 0960-9822

BARLOW, A., SHENG, G., LAI, X., HOFREITER, M. and PAIJMANS, J.L., 2019. Once lost, twice found: combined analysis of ancient giant panda sequences characterises extinct clade. Journal of Biogeography, 46 (1), pp. 251-253. ISSN 0305-0270

ALBERTI, F., GONZALEZ, J., PAIJMANS, J.L.A., BASLER, N., PREICK, M., HENNEBERGER, K., TRINKS, A., RABEDER, G., CONARD, N.J., MÜNZEL, S.C., JOGER, U., FRITSCH, G., HILDEBRANDT, T., HOFREITER, M. and BARLOW, A., 2018. Optimized DNA sampling of ancient bones using computed tomography scans. Molecular Ecology Resources, 18 (6), pp. 1196-1208. ISSN 1755-098X

BARLOW, A., CAHILL, J.A., HARTMANN, S., THEUNERT, C., XENIKOUDAKIS, G., FORTES, G.G., PAIJMANS, J.L.A., RABEDER, G., FRISCHAUF, C., GRANDAL-D’ANGLADE, A., GARCÍA-VÁZQUEZ, A., MURTSKHVALADZE, M., SAARMA, U., ANIJALG, P., SKRBINŠEK, T., BERTORELLE, G., GASPARIAN, B., BAR-OZ, G., PINHASI, R., SLATKIN, M., DALÉN, L., SHAPIRO, B. and HOFREITER, M., 2018. Partial genomic survival of cave bears in living brown bears. Nature Ecology & Evolution, 2 (10), pp. 1563-1570. ISSN 2397-334X

WESTBURY, M.V., HARTMANN, S., BARLOW, A., WIESEL, I., LEO, V., WELCH, R., PARKER, D.M., SICKS, F., LUDWIG, A., DALÉN, L. and HOFREITER, M., 2018. Extended and continuous decline in effective population size results in low genomic diversity in the world’s rarest hyena species, the brown hyena. Molecular Biology and Evolution, 35 (5), pp. 1225-1237. ISSN 0737-4038

SHENG, G.-L., BARLOW, A., COOPER, A., HOU, X.-D., JI, X.-P., JABLONSKI, N.G., ZHONG, B.-J., LIU, H., FLYNN, L.J., YUAN, J.-X., WANG, L.-R., BASLER, N., WESTBURY, M.V., HOFREITER, M. and LAI, X.-L., 2018. Ancient DNA from giant panda (Ailuropoda melanoleuca) of south-western China reveals genetic diversity loss during the holocene. Genes, 9 (4): 198. ISSN 2073-4425

PAIJMANS, J.L.A., BARLOW, A., FÖRSTER, D.W., HENNEBERGER, K., MEYER, M., NICKEL, B., NAGEL, D., WORSØE HAVMØLLER, R., BARYSHNIKOV, G.F., JOGER, U., ROSENDAHL, W. and HOFREITER, M., 2018. Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations. BMC Evolutionary Biology, 18: 156 (2018). ISSN 1471-2148

PAIJMANS, J.L.A., BARNETT, R., GILBERT, M.T.P., ZEPEDA-MENDOZA, M.L., REUMER, J.W.F., DE VOS, J., ZAZULA, G., NAGEL, D., BARYSHNIKOV, G.F., LEONARD, J.A., ROHLAND, N., WESTBURY, M.V., BARLOW, A. and HOFREITER, M., 2017. Evolutionary history of saber-toothed cats based on ancient mitogenomics. Current Biology, 27 (21), 3330-3336.e5. ISSN 0960-9822

WESTBURY, M., BALEKA, S., BARLOW, A., HARTMANN, S., PAIJMANS, J.L.A., KRAMARZ, A., FORASIEPI, A.M., BOND, M., GELFO, J.N., REGUERO, M.A., LÓPEZ-MENDOZA, P., TAGLIORETTI, M., SCAGLIA, F., RINDERKNECHT, A., JONES, W., MENA, F., BILLET, G., DE MUIZON, C., AGUILAR, J.L., MACPHEE, R.D.E. and HOFREITER, M., 2017. A mitogenomic timetree for Darwin’s enigmatic South American mammal Macrauchenia patachonica. Nature Communications, 8: 15951. ISSN 2041-1723

WĘCEK, K., HARTMANN, S., PAIJMANS, J.L.A., TARON, U., XENIKOUDAKIS, G., CAHILL, J.A., HEINTZMAN, P.D., SHAPIRO, B., BARYSHNIKOV, G., BUNEVICH, A.N., CREES, J.J., DOBOSZ, R., MANASERIAN, N., OKARMA, H., TOKARSKA, M., TURVEY, S.T., WÓJCIK, J.M., ŻYŁA, W., SZYMURA, J.M., HOFREITER, M. and BARLOW, A., 2017. Complex admixture preceded and followed the extinction of wisent in the wild. Molecular Biology and Evolution, 34 (3), pp. 598-612. ISSN 0737-4038

KEHLMAIER, C., BARLOW, A., HASTINGS, A.K., VAMBERGER, M., PAIJMANS, J.L.A., STEADMAN, D.W., ALBURY, N.A., FRANZ, R., HOFREITER, M. and FRITZ, U., 2017. Tropical ancient DNA reveals relationships of the extinct Bahamian giant tortoise Chelonoidis alburyorum. Proceedings of the Royal Society B: Biological Sciences, 284 (1846). ISSN 0962-8452

FORTES, G.G., GRANDAL-D'ANGLADE, A., KOLBE, B., FERNANDES, D., MELEG, I.N., GARCÍA-VÁZQUEZ, A., PINTO-LLONA, A.C., CONSTANTIN, S., DE TORRES, T.J., ORTIZ, J.E., FRISCHAUF, C., RABEDER, G., HOFREITER, M. and BARLOW, A., 2016. Ancient DNA reveals differences in behaviour and sociality between brown bears and extinct cave bears. Molecular Ecology, 25 (19), pp. 4907-4918. ISSN 0962-1083

HOFREITER, M., PAIJMANS, J.L.A., GOODCHILD, H., SPELLER, C.F., BARLOW, A., FORTES, G.G., THOMAS, J.A., LUDWIG, A. and COLLINS, M.J., 2015. The future of ancient DNA: technical advances and conceptual shifts. BioEssays, 37 (3), pp. 284-293. ISSN 0265-9247

Chapter in book

BARLOW, A., HOFREITER, M. and KNAPP, M., 2019. Cave bears and ancient DNA: a mutually beneficial relationship. In: D. NAGEL and N. KAVCIK-GRAUMANN, eds., Festschrift zum 80. Geburtstag von emer. Univ. Prof. Dr. Mag. Gernot Rabeder. Berichte der Geologischen Bundesanstalt (132). Vienna: Geologische Bundesanstalt, pp. 33-45.

Edited book

SHAPIRO, B., BARLOW, A., HEINTZMAN, P.D., HOFREITER, M., PAIJMANS, J.L.A. and SOARES, A.E.R., 2019. Ancient DNA: methods and protocols. Methods in molecular biology . New York: Springer. ISBN 9781493991754