Items where Author is "de Jong, BC"

Journal article

SNOBRE, J., MEEHAN, C.J., MULDERS, W., RIGOUTS, L., BUYL, R., DE JONG, B.C., VAN RIE, A. and TZFADIA, O., 2024. Frameshift mutations in the mmpR5 gene can have a bedaquiline-susceptible phenotype by retaining a protein structure and function similar to wild-type Mycobacterium tuberculosis. Antimicrobial Agents and Chemotherapy: e00854-24. ISSN 0066-4804

MACHADO, E., VASCONCELLOS, S., GOMES, L., CATANHO, M., RAMOS, J., DE CARVALHO, L., GOLDENBERG, T., REDNER, P., CALDAS, P., CAMPOS, C., DALCOLMO, M., LOURENÇO, M.C., LASUNSKAIA, E., MUSSI, V., SPINASSÉ, L., VINHAS, S., RIGOUTS, L., COGNEAU, S., DE RIJK, P., UTPATEL, C., KAUSTOVA, J., VAN DER LAAN, T., DE NEELING, H., RASTOGI, N., LEVINA, K., KÜTT, M., MOKROUSOV, I., ZHURAVLEV, V., MAKHADO, N., ŽOLNIR-DOVČ, M., JANKOVIC, V., DE WAARD, J., SISCO, M.C., VAN SOOLINGEN, D., NIEMANN, S., DE JONG, B.C., MEEHAN, C.J. and SUFFYS, P., 2024. Phylogenomic and genomic analysis reveals unique and shared genetic signatures of Mycobacterium kansasii complex species. Microbial Genomics, 10 (7): 001266. ISSN 2057-5858

TZFADIA, O., GIJSBERS, A., VUJKOVIC, A., SNOBRE, J., VARGAS, R., DEWAELE, K., MEEHAN, C.J., FARHAT, M., HAKKE, S., PETERS, P.J., DE JONG, B.C., SIROY, A. and RAVELLI, R.B.G., 2024. Single nucleotide variation catalog from clinical isolates mapped on tertiary and quaternary structures of ESX-1-related proteins reveals critical regions as putative Mtb therapeutic targets. Microbiology Spectrum. ISSN 2165-0497

LEMPENS, P., VAN DEUN, A., AUNG, K.J.M., HOSSAIN, M.A., BEHRUZNIA, M., DECROO, T., RIGOUTS, L., DE JONG, B.C. and MEEHAN, C.J., 2023. Borderline rpoB mutations transmit at the same rate as common rpoB mutations in a tuberculosis cohort in Bangladesh. Microbial Genomics, 9 (9): 001109. ISSN 2057-5858

NGABONZIZA, J.C.S., RIGOUTS, L., TORREA, G., DECROO, T., KAMANZI, E., LEMPENS, P., RUCOGOZA, A., HABIMANA, Y.M., LAENEN, L., NIYIGENA, B.E., UWIZEYE, C., USHIZIMPUMU, B., MULDERS, W., IVAN, E., TZFADIA, O., MUVUNYI, C.M., MIGAMBI, P., ANDRE, E., MAZARATI, J.B., AFFOLABI, D., UMUBYEYI, A.N., NSANZIMANA, S., PORTAELS, F., GASANA, M., DE JONG, B.C. and MEEHAN, C.J., 2022. Multidrug-resistant tuberculosis control in Rwanda overcomes a successful clone that causes most disease over a quarter century. Journal of Clinical Tuberculosis and Other Mycobacterial Diseases, 27: 100299.

PEČERSKA, J., KÜHNERT, D., MEEHAN, C.J., COSCOLLÁ, M., DE JONG, B.C., GAGNEUX, S. and STADLER, T., 2021. Quantifying transmission fitness costs of multi-drug resistant tuberculosis. Epidemics, 36: 100471. ISSN 1755-4365

SANOUSSI, C.N., COSCOLLA, M., OFORI-ANYINAM, B., OTCHERE, I.D., ANTONIO, M., NIEMANN, S., PARKHILL, J., HARRIS, S., YEBOAH-MANU, D., GAGNEUX, S., RIGOUTS, L., AFFOLABI, D., DE JONG, B.C. and MEEHAN, C.J., 2021. Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv. Microbial Genomics, 7 (7). ISSN 2057-5858

COSCOLLA, M., GAGNEUX, S., MENARDO, F., LOISEAU, C., RUIZ-RODRIGUEZ, P., BORRELL, S., OTCHERE, I.D., ASANTE-POKU, A., ASARE, P., SÁNCHEZ-BUSÓ, L., GEHRE, F., SANOUSSI, C.N., ANTONIO, M., AFFOLABI, D., FYFE, J., BECKERT, P., NIEMANN, S., ALABI, A.S., GROBUSCH, M.P., KOBBE, R., PARKHILL, J., BEISEL, C., FENNER, L., BÖTTGER, E.C., MEEHAN, C.J., HARRIS, S.R., DE JONG, B.C., YEBOAH-MANU, D. and BRITES, D., 2021. Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history. Microbial Genomics, 7 (2): 000477. ISSN 2057-5858

LEMPENS, P., DECROO, T., AUNG, K.J.M., HOSSAIN, M.A., RIGOUTS, L., MEEHAN, C.J., VAN DEUN, A. and DE JONG, B.C., 2020. Initial resistance to companion drugs should not be considered an exclusion criterion for the shorter multidrug-resistant tuberculosis treatment regimen. International Journal of Infectious Diseases, 100, pp. 357-365. ISSN 1201-9712

NGABONZIZA, J.C.S., DECROO, T., MIGAMBI, P., HABIMANA, Y.M., VAN DEUN, A., MEEHAN, C.J., TORREA, G., MASSOU, F., DE RIJK, W.B., USHIZIMPUMU, B., NIYIGENA, E.B., IVAN, E., SEMAHORE, J.M., MAZARATI, J.B., MERLE, C.S., SUPPLY, P., AFFOLABI, D., RIGOUTS, L. and DE JONG, B.C., 2020. Prevalence and drivers of false-positive rifampicin-resistant Xpert MTB/RIF results: a prospective observational study in Rwanda. The Lancet Microbe, 1 (2), e74-e83. ISSN 2666-5247

NGABONZIZA, S., HABIMANA, Y.M., DECROO, T., MIGAMBI, P., DUSHIME, A., MAZARATI, J.B., RIGOUTS, L., AFFOLABI, D., IVAN, E., MEEHAN, C.J., VAN DEUN, A., FISSETTE, K., HABIYAMBERE, I., NYARUHIRIRA, A.U., TURATE, I., SEMAHORE, J.M., NDJEKA, N., MUVUNYI, C.M., CONDO, J.U., GASANA, M., HASKER, E., TORREA, G. and DE JONG, B.C., 2020. Reduction of diagnostic and treatment delays reduces rifampicin-resistant tuberculosis mortality in Rwanda. International Journal of Tuberculosis and Lung Disease, 24 (3), pp. 329-339. ISSN 1027-3719

OFORI-ANYINAM, B., RILEY, A.J., JOBARTEH, T., GITTEH, E., SARR, B., FAAL-JAWARA, T.I., RIGOUTS, L., SENGHORE, M., KEHINDE, A., ONYEJEPU, N., ANTONIO, M., DE JONG, B.C., GEHRE, F. and MEEHAN, C.J., 2020. Comparative genomics shows differences in the electron transport and carbon metabolic pathways of Mycobacterium africanum relative to Mycobacterium tuberculosis and suggests an adaptation to low oxygen tension. Tuberculosis, 120: 101899. ISSN 1472-9792

NGABONZIZA, J.C.S., LOISEAU, C., MARCEAU, M., JOUET, A., MENARDO, F., TZFADIA, O., ANTOINE, R., NIYIGENA, E.B., MULDERS, W., FISSETTE, K., DIELS, M., GAUDIN, C., DUTHOY, S., SSENGOOBA, W., ANDRÉ, E., KASWA, M.K., HABIMANA, Y.M., BRITES, D., AFFOLABI, D., MAZARATI, J.B., DE JONG, B.C., RIGOUTS, L., GAGNEUX, S., MEEHAN, C.J. and SUPPLY, P., 2020. A sister lineage of the Mycobacterium tuberculosis complex discovered in the African Great Lakes region. Nature Communications, 11: 2917.

MEEHAN, C.J., GOIG, G.A., KOHL, T.A., VERBOVEN, L., DIPPENAAR, A., EZEWUDO, M., FARHAT, M.R., GUTHRIE, J.L., LAUKENS, K., MIOTTO, P., OFORI-ANYINAM, B., DREYER, V., SUPPLY, P., SURESH, A., UTPATEL, C., VAN SOOLINGEN, D., ZHOU, Y., ASHTON, P.M., BRITES, D., CABIBBE, A.M., DE JONG, B.C., DE VOS, M., MENARDO, F., GAGNEUX, S., GAO, Q., HEUPINK, T.H., LIU, Q., LOISEAU, C., RIGOUTS, L., RODWELL, T.C., TAGLIANI, E., WALKER, T.M., WARREN, R.M., ZHAO, Y., ZIGNOL, M., SCHITO, M., GARDY, J., CIRILLO, D.M., NIEMANN, S., COMAS, I. and VAN RIE, A., 2019. Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues. Nature Reviews Microbiology, 17 (9), pp. 533-545. ISSN 1740-1526

NG, K.C.S., NGABONZIZA, J.C.S., LEMPENS, P., DE JONG, B.C., VAN LETH, F. and MEEHAN, C.J., 2019. Bridging the TB data gap: in silico extraction of rifampicin-resistant tuberculosis diagnostic test results from whole genome sequence data. PeerJ, 7: e7564. ISSN 2167-8359

DE JONG, B.C., GAYE, B.M., LUYTEN, J., VAN BUITENEN, B., ANDRÉ, E., MEEHAN, C.J., O’SIOCHAIN, C., TOMSU, K., URBAIN, J., GRIETENS, K.P., NJUE, M., PINXTEN, W., GEHRE, F., NYAN, O., BUVÉ, A., ROCA, A., RAVINETTO, R. and ANTONIO, M., 2019. Ethical considerations for movement mapping to identify disease transmission hotspots. Emerging Infectious Diseases, 25 (7). ISSN 1080-6040

SANOUSSI, C.N., DE JONG, B.C., AFFOLABI, D., MEEHAN, C.J., ODOUN, M. and RIGOUTS, L., 2019. Storage of sputum in cetylpyridinium chloride, OMNIgene.SPUTUM, and ethanol is compatible with molecular tuberculosis diagnostic testing. Journal of Clinical Microbiology, 57 (7): e00275-19. ISSN 0095-1137

VANDELANNOOTE, K., PHANZU, D.M., KIBADI, K., EDDYANI, M., MEEHAN, C.J., JORDAENS, K., LEIRS, H., PORTAELS, F., STINEAR, T.P., HARRIS, S.R. and DE JONG, B.C., 2019. Mycobacterium ulcerans population genomics to inform on the spread of Buruli ulcer across Central Africa. mSphere, 4 (1): e00472-18. ISSN 2379-5042

OTCHERE, I.D., COSCOLLÁ, M., SÁNCHEZ-BUSÓ, L., ASANTE-POKU, A., BRITES, D., LOISEAU, C., MEEHAN, C., OSEI-WUSU, S., FORSON, A., LARYEA, C., YAHAYAH, A.I., BADDOO, A., ANSA, G.A., ABOAGYE, S.Y., ASARE, P., BORRELL, S., GEHRE, F., BECKERT, P., KOHL, T.A., N’DIRA, S., BEISEL, C., ANTONIO, M., NIEMANN, S., DE JONG, B.C., PARKHILL, J., HARRIS, S.R., GAGNEUX, S. and YEBOAH-MANU, D., 2018. Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. Scientific Reports, 8 (1): 11269. ISSN 2045-2322

MEEHAN, C.J., MORIS, P., KOHL, T.A., PEČERSKA, J., AKTER, S., MERKER, M., UTPATEL, C., BECKERT, P., GEHRE, F., LEMPENS, P., STADLER, T., KASWA, M.K., KÜHNERT, D., NIEMANN, S. and DE JONG, B.C., 2018. The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology. EBioMedicine, 37, pp. 410-416. ISSN 2352-3964

NG, K.C.S., VAN DEUN, A., MEEHAN, C.J., TORREA, G., DRIESEN, M., GABRIËLS, S., RIGOUTS, L., ANDRÉ, E. and DE JONG, B.C., 2018. Xpert Ultra can unambiguously identify specific rifampin resistance-conferring mutations. Journal of Clinical Microbiology, 56 (9): 00686-18. ISSN 0095-1137

BUULTJENS, A.H., VANDELANNOOTE, K., MEEHAN, C.J., EDDYANI, M., DE JONG, B.C., FYFE, J.A.M., GLOBAN, M., TOBIAS, N.J., PORTER, J.L., TOMITA, T., TAY, E.L., SEEMANN, T., HOWDEN, B.P., JOHNSON, P.D.R. and STINEAR, T.P., 2018. Comparative genomics shows that Mycobacterium ulcerans migration and expansion preceded the rise of Buruli ulcer in southeastern Australia. Applied and Environmental Microbiology, 84 (8): e02612-17. ISSN 0099-2240

LEMPENS, P., MEEHAN, C.J., VANDELANNOOTE, K., FISSETTE, K., DE RIJK, P., VAN DEUN, A., RIGOUTS, L. and DE JONG, B.C., 2018. Isoniazid resistance levels of Mycobacterium tuberculosis can largely be predicted by high-confidence resistance-conferring mutations. Scientific Reports, 8 (1): 3246. ISSN 2045-2322

NG, K.C., MEEHAN, C.J., TORREA, G., GOEMINNE, L., DIELS, M., RIGOUTS, L., DE JONG, B.C. and ANDRÉ, E., 2018. Potential application of digitally linked tuberculosis diagnostics for real-time surveillance of drug-resistant tuberculosis transmission: validation and analysis of test results. JMIR Medical Informatics, 6 (1): e12.