Items where Author is "Barlow, A"

Journal article

AZIZ, M.A., SMITH, O., JACKSON, H.A., TOLLINGTON, S., DARLOW, S., BARLOW, A., ISLAM, M.A. and GROOMBRIDGE, J., 2022. Phylogeography of Panthera tigris in the mangrove forest of the Sundarbans. Endangered Species Research, 48, pp. 87-97. ISSN 1863-5407

BALEKA, S., HERRIDGE, V.L., CATALANO, G., LISTER, A.M., DICKINSON, M.R., DI PATTI, C., BARLOW, A., PENKMAN, K.E.H., HOFREITER, M. and PAIJMANS, J.L.A., 2021. Estimating the dwarfing rate of an extinct Sicilian elephant. Current Biology. ISSN 0960-9822

STRAUBE, N., LYRA, M.L., PAIJMANS, J.L.A., PREICK, M., BASLER, N., PENNER, J., RÖDEL, M., WESTBURY, M.V., HADDAD, C.F.B., BARLOW, A. and HOFREITER, M., 2021. Successful application of ancient DNA extraction and library construction protocols to museum wet collection specimens. Molecular Ecology Resources. ISSN 1755-098X

GURKE, M., VIDAL-GOROSQUIETA, A., PAJIMANS, J.L.A., WȨCEK, K., BARLOW, A., GONZÁLEZ-FORTES, G., HARTMANN, S., GRANDAL-D’ANGLADE, A. and HOFREITER, M., 2021. Insight into the introduction of domestic cattle and the process of Neolithization to the Spanish region Galicia by genetic evidence. PLOS ONE, 16 (4): e0249537. ISSN 1932-6203

PAIJMANS, J.L.A., BARLOW, A., BECKER, M.S., CAHILL, J.A., FICKEL, J., FÖRSTER, D.W.G., GRIES, K., HARTMANN, S., HAVMØLLER, R.W., HENNEBERGER, K., KERN, C., KITCHENER, A.C., LORENZEN, E.D., MAYER, F., OBRIEN, S.J., VON SETH, J., SINDING, M.-H.S., SPONG, G., UPHYRKINA, O., WACHTER, B., WESTBURY, M.V., DALÉN, L., BHAK, J., MANICA, A. and HOFREITER, M., 2021. African and Asian leopards are highly differentiated at the genomic level. Current Biology. ISSN 0960-9822

BARLOW, A., PAIJMANS, J.L.A., ALBERTI, F., GASPARYAN, B., BAR-OZ, G., PINHASI, R., FORONOVA, I., PUZACHENKO, A.Y., PACHER, M., DALÉN, L., BARYSHNIKOV, G. and HOFREITER, M., 2021. Middle Pleistocene genome calibrates a revised evolutionary history of extinct cave bears. Current Biology. ISSN 0960-9822

DÖPPES, D., ALBERTI, F., BARLOW, A., KRUTTER, S., FRIEDRICH, R., HOFREITER, M., LINDAUER, S., KAVCIK-GRAUMANN, N., ROSENDAHL, W. and RABEDER, G., 2021. The late pleistocene cave bear fauna of the Torrener Bärenhöhle in the northern alps (Salzburg, Austria). Historical Biology. ISSN 0891-2963

TARON, U.H., PAIJMANS, J.L.A., BARLOW, A., PREICK, M., IYENGAR, A., DRĂGUȘIN, V., VASILE, Ș., MARCISZAK, A., ROBLÍČKOVÁ, M. and HOFREITER, M., 2021. Ancient DNA from the Asiatic wild dog (Cuon alpinus) from Europe. Genes, 12 (2): 144.

KAZANDJIAN, T.D., PETRAS, D., ROBINSON, S.D., VAN THIEL, J., GREENE, H.W., ARBUCKLE, K., BARLOW, A., CARTER, D.A., WOUTERS, R.M., WHITELEY, G., WAGSTAFF, S.C., ARIAS, A.S., ALBULESCU, L., PLETTENBERG LAING, A., HALL, C., HEAP, A., PENRHYN-LOWE, S., MCCABE, C.V., AINSWORTH, S., DA SILVA, R.R., DORRESTEIN, P.C., RICHARDSON, M.K., GUTIÉRREZ, J.M., CALVETE, J.J., HARRISON, R.A., VETTER, I., UNDHEIM, E.A.B., WÜSTER, W. and CASEWELL, N.R., 2021. Convergent evolution of pain-inducing defensive venom components in spitting cobras. Science, 371 (6527), pp. 386-390. ISSN 0036-8075

YUAN, J., SHENG, G., PREICK, M., SUN, B., HOU, X., CHEN, S., TARON, U.H., BARLOW, A., WANG, L., HU, J., DENG, T., LAI, X. and HOFREITER, M., 2020. Mitochondrial genomes of Late Pleistocene caballine horses from China belong to a separate clade. Quaternary Science Reviews, 250: 106691. ISSN 0277-3791

NAITO, Y.I., MELEG, I.N., ROBU, M., VLAICU, M., DRUCKER, D.G., WISSING, C., HOFREITER, M., BARLOW, A. and BOCHERENS, H., 2020. Heavy reliance on plants for Romanian cave bears evidenced by amino acid nitrogen isotope analysis. Scientific Reports, 10 (1): 6612. ISSN 2045-2322

PAIJMANS, J.L.A., BARLOW, A., HENNEBERGER, K., FICKEL, J., HOFREITER, M. and FOERSTER, D.W.G., 2020. Ancestral mitogenome capture of the Southeast Asian banded linsang. PLoS ONE, 15 (6): e0234385. ISSN 1932-6203

LYRA, M.L., LOURENÇO, A.C.C., PINHEIRO, P.D.P., PEZZUTI, T.L., BAÊTA, D., BARLOW, A., HOFREITER, M., POMBAL, J.P., HADDAD, C.F.B. and FAIVOVICH, J., 2020. High-throughput DNA sequencing of museum specimens sheds light on the long-missing species of the Bokermannohyla claresignata group (Anura: Hylidae: Cophomantini). Zoological Journal of the Linnean Society. ISSN 0024-4082

WESTBURY, M.V., HARTMANN, S., BARLOW, A., PREICK, M., RIDUSH, B., NAGEL, D., RATHGEBER, T., ZIEGLER, R., BARYSHNIKOV, G., SHENG, G., LUDWIG, A., WIESEL, I., DALEN, L., BIBI, F., WERDELIN, L., HELLER, R. and HOFREITER, M., 2020. Hyena palaeogenomes reveal a complex evolutionary history of cross-continental gene flow between spotted and cave hyena. Science Advances, 6 (11): eaay0456. ISSN 2375-2548

XENIKOUDAKIS, G., AHMED, M., HARRIS, J.C., WADLEIGH, R., PAIJMANS, J.L.A., HARTMANN, S., BARLOW, A., LERNER, H. and HOFREITER, M., 2020. Ancient DNA reveals twenty million years of aquatic life in beavers. Current Biology, 30 (3), R110-R111. ISSN 0960-9822

BARLOW, A., HARTMANN, S., GONZALEZ, J., HOFREITER, M. and PAIJMANS, J., 2020. Consensify: a method for generating pseudohaploid genome sequences from palaeogenomic datasets with reduced error rates. Genes, 11 (1): 50. ISSN 2073-4425

HARUDA, A.F., VENTRESCA MILLER, A.R., PAIJMANS, J.L.A., BARLOW, A., TAZHEKEYEV, A., BILALOV, S., HESSE, Y., PREICK, M., KING, T., THOMAS, R., HÄRKE, H. and ARZHANTSEVA, I., 2020. The earliest domestic cat on the Silk Road. Scientific Reports, 10: 11241. ISSN 2045-2322

YUAN, J., HOU, X., BARLOW, A., PREICK, M., TARON, U., ALBERTI, F., BASLER, N., DENG, T., LAI, X., HOFREITER, M. and SHENG, G., 2019. Molecular identification of late and terminal Pleistocene Equus ovodovi from northeastern China. PLoS ONE, 14 (5): e0216883.

BARLOW, A., WÜSTER, W., KELLY, C.M.R., BRANCH, W.R., PHELPS, T. and TOLLEY, K.A., 2019. Ancient habitat shifts and organismal diversification are decoupled in the African viper genus Bitis (Serpentes: Viperidae). Journal of Biogeography, 46 (6), pp. 1234-1248. ISSN 0305-0270

SHENG, G., BASLER, N., JI, X., PAIJMANS, J.L., ALBERTI, F., PREICK, M., HARTMANN, S., WESTBURY, M.V., YUAN, J., JABLONSKI, N.G., XENIKOUDAKIS, G., HOU, X., XIAO, B., LIU, J., HOFREITER, M., LAI, X. and BARLOW, A., 2019. Paleogenome reveals genetic contribution of extinct giant panda to extant populations. Current Biology, 29 (10), pp. 1695-1700. ISSN 0960-9822

BARLOW, A., SHENG, G., LAI, X., HOFREITER, M. and PAIJMANS, J.L., 2019. Once lost, twice found: combined analysis of ancient giant panda sequences characterises extinct clade. Journal of Biogeography, 46 (1), pp. 251-253. ISSN 0305-0270

ALBERTI, F., GONZALEZ, J., PAIJMANS, J.L.A., BASLER, N., PREICK, M., HENNEBERGER, K., TRINKS, A., RABEDER, G., CONARD, N.J., MÜNZEL, S.C., JOGER, U., FRITSCH, G., HILDEBRANDT, T., HOFREITER, M. and BARLOW, A., 2018. Optimized DNA sampling of ancient bones using computed tomography scans. Molecular Ecology Resources, 18 (6), pp. 1196-1208. ISSN 1755-098X

AZIZ, M.A., SMITH, O., BARLOW, A., TOLLINGTON, S., ISLAM, M.A. and GROOMBRIDGE, J.J., 2018. Do rivers influence fine-scale population genetic structure of tigers in the Sundarbans? Conservation Genetics, 19 (5), pp. 1137-1151. ISSN 1566-0621

THORPE, R.S., BARLOW, A., SURGET-GROBA, Y. and MALHOTRA, A., 2018. Multilocus phylogeny, species age and biogeography of the Lesser Antillean anoles. Molecular Phylogenetics and Evolution, 127, pp. 682-695. ISSN 1055-7903

BARLOW, A., CAHILL, J.A., HARTMANN, S., THEUNERT, C., XENIKOUDAKIS, G., FORTES, G.G., PAIJMANS, J.L.A., RABEDER, G., FRISCHAUF, C., GRANDAL-D’ANGLADE, A., GARCÍA-VÁZQUEZ, A., MURTSKHVALADZE, M., SAARMA, U., ANIJALG, P., SKRBINŠEK, T., BERTORELLE, G., GASPARIAN, B., BAR-OZ, G., PINHASI, R., SLATKIN, M., DALÉN, L., SHAPIRO, B. and HOFREITER, M., 2018. Partial genomic survival of cave bears in living brown bears. Nature Ecology & Evolution, 2 (10), pp. 1563-1570. ISSN 2397-334X

WESTBURY, M.V., HARTMANN, S., BARLOW, A., WIESEL, I., LEO, V., WELCH, R., PARKER, D.M., SICKS, F., LUDWIG, A., DALÉN, L. and HOFREITER, M., 2018. Extended and continuous decline in effective population size results in low genomic diversity in the world’s rarest hyena species, the brown hyena. Molecular Biology and Evolution, 35 (5), pp. 1225-1237. ISSN 0737-4038

SHENG, G.-L., BARLOW, A., COOPER, A., HOU, X.-D., JI, X.-P., JABLONSKI, N.G., ZHONG, B.-J., LIU, H., FLYNN, L.J., YUAN, J.-X., WANG, L.-R., BASLER, N., WESTBURY, M.V., HOFREITER, M. and LAI, X.-L., 2018. Ancient DNA from giant panda (Ailuropoda melanoleuca) of south-western China reveals genetic diversity loss during the holocene. Genes, 9 (4): 198. ISSN 2073-4425

TARON, U., LELL, M., BARLOW, A. and PAIJMANS, J., 2018. Testing of alignment parameters for ancient samples: evaluating and optimizing mapping parameters for ancient samples using the TAPAS tool. Genes, 9. ISSN 2073-4425

PAIJMANS, J.L.A., BARLOW, A., FÖRSTER, D.W., HENNEBERGER, K., MEYER, M., NICKEL, B., NAGEL, D., WORSØE HAVMØLLER, R., BARYSHNIKOV, G.F., JOGER, U., ROSENDAHL, W. and HOFREITER, M., 2018. Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations. BMC Evolutionary Biology, 18: 156 (2018). ISSN 1471-2148

WÜSTER, W., CHIRIO, L., TRAPE, J.-F., INEICH, I., JACKSON, K., GREENBAUM, E., BARRON, C., KUSAMBA, C., NAGY, Z.T., STOREY, R., HALL, C., WÜSTER, C.E., BARLOW, A. and BROADLEY, D.G., 2018. Integration of nuclear and mitochondrial gene sequences and morphology reveals unexpected diversity in the forest cobra (Naja melanoleuca) species complex in Central and West Africa (Serpentes: Elapidae). Zootaxa, 4455 (1), pp. 68-98. ISSN 1175-5326

BASLER, N., XENIKOUDAKIS, G., WESTBURY, M.V., SONG, L., SHENG, G. and BARLOW, A., 2017. Reduction of the contaminant fraction of DNA obtained from an ancient giant panda bone. BMC Research Notes, 10 (1): 754. ISSN 1756-0500

PAIJMANS, J.L.A., BARNETT, R., GILBERT, M.T.P., ZEPEDA-MENDOZA, M.L., REUMER, J.W.F., DE VOS, J., ZAZULA, G., NAGEL, D., BARYSHNIKOV, G.F., LEONARD, J.A., ROHLAND, N., WESTBURY, M.V., BARLOW, A. and HOFREITER, M., 2017. Evolutionary history of saber-toothed cats based on ancient mitogenomics. Current Biology, 27 (21), 3330-3336.e5. ISSN 0960-9822

AZIZ, M.A., TOLLINGTON, S., BARLOW, A., GREENWOOD, C., GOODRICH, J.M., SMITH, O., SHAMSUDDOHA, M., ISLAM, M.A. and GROOMBRIDGE, J.J., 2017. Using non-invasively collected genetic data to estimate density and population size of tigers in the Bangladesh Sundarbans. Global Ecology and Conservation, 12, pp. 272-282.

BECK, S.V., CARVALHO, G.R., BARLOW, A., RÜBER, L., TAN, H.H., NUGROHO, E., WOWOR, D., MOHD NOR, S.A., HERDER, F., MUCHLISIN, Z.A. and DE BRUYN, M., 2017. Plio-Pleistocene phylogeography of the Southeast Asian Blue Panchax killifish, Aplocheilus panchax. PLOS ONE, 12 (7): e0179557. ISSN 1932-6203

WESTBURY, M., BALEKA, S., BARLOW, A., HARTMANN, S., PAIJMANS, J.L.A., KRAMARZ, A., FORASIEPI, A.M., BOND, M., GELFO, J.N., REGUERO, M.A., LÓPEZ-MENDOZA, P., TAGLIORETTI, M., SCAGLIA, F., RINDERKNECHT, A., JONES, W., MENA, F., BILLET, G., DE MUIZON, C., AGUILAR, J.L., MACPHEE, R.D.E. and HOFREITER, M., 2017. A mitogenomic timetree for Darwin’s enigmatic South American mammal Macrauchenia patachonica. Nature Communications, 8: 15951. ISSN 2041-1723

WĘCEK, K., HARTMANN, S., PAIJMANS, J.L.A., TARON, U., XENIKOUDAKIS, G., CAHILL, J.A., HEINTZMAN, P.D., SHAPIRO, B., BARYSHNIKOV, G., BUNEVICH, A.N., CREES, J.J., DOBOSZ, R., MANASERIAN, N., OKARMA, H., TOKARSKA, M., TURVEY, S.T., WÓJCIK, J.M., ŻYŁA, W., SZYMURA, J.M., HOFREITER, M. and BARLOW, A., 2017. Complex admixture preceded and followed the extinction of wisent in the wild. Molecular Biology and Evolution, 34 (3), pp. 598-612. ISSN 0737-4038

AZIZ, M.A., TOLLINGTON, S., BARLOW, A., GOODRICH, J., SHAMSUDDOHA, M., ISLAM, M.A. and GROOMBRIDGE, J.J., 2017. Investigating patterns of tiger and prey poaching in the Bangladesh Sundarbans: implications for improved management. Global Ecology and Conservation, 9, pp. 70-81. ISSN 2351-9894

KEHLMAIER, C., BARLOW, A., HASTINGS, A.K., VAMBERGER, M., PAIJMANS, J.L.A., STEADMAN, D.W., ALBURY, N.A., FRANZ, R., HOFREITER, M. and FRITZ, U., 2017. Tropical ancient DNA reveals relationships of the extinct Bahamian giant tortoise Chelonoidis alburyorum. Proceedings of the Royal Society B: Biological Sciences, 284 (1846). ISSN 0962-8452

FORTES, G.G., GRANDAL-D'ANGLADE, A., KOLBE, B., FERNANDES, D., MELEG, I.N., GARCÍA-VÁZQUEZ, A., PINTO-LLONA, A.C., CONSTANTIN, S., DE TORRES, T.J., ORTIZ, J.E., FRISCHAUF, C., RABEDER, G., HOFREITER, M. and BARLOW, A., 2016. Ancient DNA reveals differences in behaviour and sociality between brown bears and extinct cave bears. Molecular Ecology, 25 (19), pp. 4907-4918. ISSN 0962-1083

ZANCOLLI, G., BAKER, T.G., BARLOW, A., BRADLEY, R.K., CALVETE, J.J., CARTER, K.C., DE JAGER, K., OWENS, J.B., PRICE, J.F., SANZ, L., SCHOLES-HIGHAM, A., SHIER, L., WOOD, L., WÜSTER, C.E. and WÜSTER, W., 2016. Is hybridization a source of adaptive venom variation in rattlesnakes? A test, using a crotalus scutulatus × viridis hybrid zone in Southwestern New Mexico. Toxins, 8 (6): 188. ISSN 2072-6651

ABELL, L., QUALTER, P., BREWER, G., BARLOW, A., STYLIANOU, M., HENZI, P. and BARRETT, L., 2015. Why Machiavellianism matters in childhood: the relationship between children's Machiavellian traits and their peer interactions in a natural setting. Europe’s Journal of Psychology, 11 (3), pp. 484-493. ISSN 1841-0413

THORPE, R.S., BARLOW, A., MALHOTRA, A. and SURGET-GROBA, Y., 2015. Widespread parallel population adaptation to climate variation across a radiation: implications for adaptation to climate change. Molecular Ecology, 24 (5), pp. 1019-1030. ISSN 0962-1083

HOFREITER, M., PAIJMANS, J.L.A., GOODCHILD, H., SPELLER, C.F., BARLOW, A., FORTES, G.G., THOMAS, J.A., LUDWIG, A. and COLLINS, M.J., 2015. The future of ancient DNA: technical advances and conceptual shifts. BioEssays, 37 (3), pp. 284-293. ISSN 0265-9247

BARLOW, A., BAKER, K., HENDRY, C., PEPPIN, L., PHELPS, T., TOLLEY, K., WÜSTER, C. and WÜSTER, W., 2013. Phylogeography of the widespread African puff adder (Bitis arietans) reveals multiple Pleistocene refugia in southern Africa. Molecular Ecology, 22 (4), pp. 1134-1157. ISSN 0962-1083

BARLOW, A., GRAIL, W., DE BRUYN, M. and WÜSTER, W., 2012. Anonymous nuclear markers for the African adders (Serpentes: Viperidae: Bitis). Conservation Genetics Resources, 4, pp. 967-969. ISSN 1877-7252

RICHARDS, D., BARLOW, A. and WÜSTER, W., 2012. Venom lethality and diet: differential responses of natural prey and model organisms to the venom of the saw-scaled vipers (Echis). Toxicon, 59 (1), pp. 110-116. ISSN 0041-0101

DE BRUYN, M., GRAIL, W., BARLOW, A. and CARVALHO, G., 2010. Anonymous nuclear markers for southeast asian halfbeak fishes (Dermogenys). Conservation Genetics Resources, 2 (s. 1), pp. 325-327. ISSN 1877-7252

BARLOW, A., POOK, C., HARRISON, R. and WÜSTER, W., 2009. Coevolution of diet and prey-specific venom activity supports the role of selection in snake venom evolution. Proceedings of the Royal Society B: Biological Sciences, 276 (1666), pp. 2443-2449. ISSN 0962-8452

Chapter in book

BARLOW, A., HOFREITER, M. and KNAPP, M., 2019. Cave bears and ancient DNA: a mutually beneficial relationship. In: D. NAGEL and N. KAVCIK-GRAUMANN, eds., Festschrift zum 80. Geburtstag von emer. Univ. Prof. Dr. Mag. Gernot Rabeder. Berichte der Geologischen Bundesanstalt (132). Vienna: Geologische Bundesanstalt, pp. 33-45.

HENNEBERGER, K., BARLOW, A. and PAIJMANS, J.L.A., 2019. Double-stranded library preparation for ancient and other degraded samples. In: B. SHAPIRO, A. BARLOW, P.D. HEINTZMAN, M. HOFREITER, J.L.A. PAIJMANS and A.E.R. SOARES, eds., Ancient DNA: methods and protocols. Methods in molecular biology (1963). New York: Humana Press, pp. 65-73. ISBN 9781493991754

Edited book

SHAPIRO, B., BARLOW, A., HEINTZMAN, P.D., HOFREITER, M., PAIJMANS, J.L.A. and SOARES, A.E.R., 2019. Ancient DNA: methods and protocols. Methods in molecular biology . New York: Springer. ISBN 9781493991754