Items where Author is "Hoyles, L"

Journal article

SHAH, S.N., KNAUSENBERGER, T.B., CONNELL, E., LE GALL, G., HARDY, T.A.J., RANDALL, D.W., MCCAFFERTY, K., YAQOOB, M.M., SOLITO, E., MÜLLER, M., STACHULSKI, A.V., GLEN, R.C., VAUZOUR, D., HOYLES, L. and MCARTHUR, S., 2024. Cerebrovascular damage caused by the gut microbe/host co-metabolite p-cresol sulfate is prevented by blockade of the EGF receptor. Gut Microbes, 16 (1): 2431651. ISSN 1949-0976

SHUTT-MCCABE, J., SHAIK, K., HOYLES, L. and MCVICKER, G., 2024. The plasmid-borne hipBA operon of Klebsiella michiganensis encodes a potent plasmid stabilization system. Journal of Applied Microbiology: lxae246. ISSN 1364-5072

QUESADA-VÁZQUEZ, S., LATORRE, J., TEJERA, N., TOBAJAS, Y., HILDEBRAND, F., BERAZA, N., BURCELIN, R., DUMAS, M.-E., FEDERICI, M., HOYLES, L., DEL BAS, J., ESCOTÉ, X., FERNÁNDEZ-REAL, J.-M. and MAYNERIS-PERXACHS, J., 2023. Potential therapeutic implications of histidine catabolism by the gut microbiota in NAFLD patients with morbid obesity. Cell Reports Medicine, 4 (12): 101341. ISSN 2666-3791

ENGLISH, J., NEWBERRY, F., HOYLES, L., PATRICK, S. and STEWART, L., 2023. Genomic analyses of Bacteroides fragilis: subdivisions I and II represent distinct species. Journal of Medical Microbiology, 72 (11): 001768. ISSN 0022-2615

NEGUS, D., FOSTER, G. and HOYLES, L., 2023. Lelliottia amnigena recovered from the lung of a harbour porpoise, and comparative analyses with Lelliottia spp. Access Microbiology, 5 (11): 000694.v3. ISSN 2516-8290

ELADAWY, M., THOMAS, J. and HOYLES, L., 2023. Phenotypic and genomic characterization of Pseudomonas aeruginosa isolates recovered from catheter-associated urinary tract infections in an Egyptian hospital. Microbial Genomics, 9 (10): 001125. ISSN 2057-5858

HOYLES, L. and WALKER, A., 2023. Human microbiome myths and misconceptions. Nature Microbiology, 8, pp. 1392-1396. ISSN 2058-5276

MOLINARO, A., NEMET, I., BEL LASSEN, P., CHAKAROUN, R., NIELSEN, T., ARON-WISNEWSKY, J., BERGH, P.-O., LI, L., HENRICSSON, M., KØBER, L., ISNARD, R., HELFT, G., STUMVOLL, M., PEDERSEN, O., SMITH, J.G., TANG, W.H.W., CLÉMENT, K., HAZEN, S.L., BÄCKHED, F., ALVES, R., AMOUYAL, C., ANDERSSON GALIJATOVIC, E.A., ANDREELLI, F., BARTHELEMY, O., BASTARD, J.-P., BATISSE, J.-P., BERLAND, M., BITTAR, R., BLÜHER, M., BORK, P., BOURRON, O., CAMUS, M., CASSUTO, D., CIANGURA, C., COELHO, L.P., COLLET, J.-P., DUMAS, M.-E., EHRLICH, S.D., ENGELBRECHTSEN, L., FEZEU, L., FORSLUND, S., FROMENTIN, S., GALAN, P., GIRAL, P., GØTZE, J.P., HANSEN, T., HANSEN, T.H., HARTEMANN, A., HARTMANN, B., HERCBERG, S., HOLMES, B., HOLST, J.J., HORNBAK, M., HOYLES, L., HULOT, J.-S., JAQUEMINET, S., KERNEIS, M., KHEMIS, J., KOZLOWSKI, R., PEDERSEN, H.K., KUHN, M., MANNERÅS-HOLM, L., MARKO, L., MARTINEZ-GILI ROBIN MASSEY, L., MAZIERS, N., MEDINA-STAMMINGER, J., MOITINHO-SILVA, L., MONTALESCOT, G., MOUTEL, S., NEVES, A.L., OLANIPEKUN, M., OPPERT, J.-M., POITOU, C., POUSSET, F., POUZOULET, L., ROUAULT, C., SILVAIN, J. and VESTERGAARD, H., 2023. Microbially produced imidazole propionate is associated with heart failure and mortality. JACC: Heart Failure, 11 (7), pp. 810-821. ISSN 2213-1779

NEWBERRY, F., SHIBU, P., SMITH-ZAITLIK, T., ELADAWY, M., MCCARTNEY, A.L., HOYLES, L. and NEGUS, D., 2023. Lytic bacteriophage vB_KmiS-Kmi2C disrupts biofilms formed by members of the Klebsiella oxytoca complex, and represents a novel virus family and genus. Journal of Applied Microbiology, 134 (4): lxad079. ISSN 1364-5072

MCCARTNEY, A. and HOYLES, L., 2023. The role of Klebsiella populations in preterm infants. Biochemical Society Transactions, 51 (2), pp. 887-896. ISSN 0300-5127

RANDALL, D.W., KIESWICH, J., HOYLES, L., MCCAFFERTY, K., CURTIS, M. and YAQOOB, M.M., 2023. Gut dysbiosis in experimental kidney disease: a meta-analysis of rodent repository data. Journal of the American Society of Nephrology. ISSN 1046-6673

DUMAS, M.-E., ANDRIKOPOULOS, P., ARON-WISNESWKY, J., CHAKAROUN, R., MYRIDAKIS, A., FORSLUND, S., NIELSEN, T., ADIOUCH, S., HOLMES, B., CHILLOUX, J., VIEIRA-SILVA, S., FALONY, G., SALEM, J.-E., ANDREELLI, F., BELDA, E., KIESWICH, J., CHECHI, K., PUIG-CASTELLVÍ, F., CHEVALIER, M., LE CHATELIER, E., OLANIPEKUN, M., HOYLES, L., ALVES, R., HELFT, G., ISNARD, R., VALEUR KØBER, L., PEDRO COELHO, L., ROUAULT, C., GAUGUIER, D., GØTZE, J., PRIFTI, E., ZUCKER, J.-D., BÄCKHED, F., VESTERGAARD, H., HANSEN, T., OPPERT, J.-M., BLÜHER, M., NIELSEN, J., RAES, J., BORK, P., YAQOOB, M., STUMVOLL, M., PEDERSEN, O., EHRLICH, S., CLEMENT, K. and METACARDIS CONSORTIUM, 2023. Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide. Nature Communications, 14 (1): 5843. ISSN 2041-1723

ALEXANDER, J.L., POSMA, J., SCOTT, A., POYNTER, L., DORIA, L., MCDONALD, J., HUGHES, D., SUSOVA, S., LISKA, V., SOUCEK, P., GOMEZ-ROMERO, M., HOYLES, L., GERLINGER, M., TAKATS, Z., MARCHESI, J., TEARE, J. and KINROSS, J., 2023. Pathobionts in the tumour microbiota predict survival following resection for colorectal cancer. Microbiome, 11: 100. ISSN 2049-2618

PENNEY, N., YEUNG, D., GARCIA-PEREZ, I., POSMA, J., KOPYTEK, A., GARRATT, B., ASHRAFIAN, H., FROST, G., MARCHESI, J., PURKAYASTHA, S., HOYLES, L., DARZI, A. and HOLMES, E., 2022. Multi-omic phenotyping reveals host-microbe responses to bariatric surgery, glycaemic control and obesity. Communications Medicine, 2: 127. ISSN 2730-664X

SMITH-ZAITLIK, T., SHIBU, P., MCCARTNEY, A., FOSTER, G., HOYLES, L. and NEGUS, D., 2022. Extended genomic analyses of the broad-host-range phages vB_KmiM-2Di and vB_KmiM-4Dii reveal slopekviruses have highly conserved genomes. Microbiology, 168 (9). ISSN 1350-0872

STACHULSKI, A.V., KNAUSENBERGER, T.B.-A., SHAH, S.N., HOYLES, L. and MCARTHUR, S., 2022. A host–gut microbial co-metabolite of aromatic amino acids, p-cresol glucuronide, promotes blood–brain barrier integrity in vivo. Tissue Barriers: 2073175. ISSN 2168-8362

NOBLE, A., PRING, T., DURANT, L., MAN, R., DILKE, S., HOYLES, L., JAMES, S., CARDING, S., JENKINS, I. and KNIGHT, S., 2022. Altered immunity to microbiota, B cell activation and depleted γδ / resident memory T cells in colorectal cancer. Cancer Immunology, Immunotherapy. ISSN 0340-7004

NOBLE, A., DURANT, L., DILKE, S.M., MAN, R., MARTIN, I., PATEL, R., HOYLES, L., PRING, E.T., LATCHFORD, A., CLARK, S.K., CARDING, S.R. and KNIGHT, S.C., 2022. Altered mucosal immune-microbiota interactions in familial adenomatous polyposis. Clinical and Translational Gastroenterology. ISSN 2155-384X

FROMENTIN, S., FORSLUND, S., CHECHI, K., ARON-WISNEWSKY, J., CHAKAROUN, R., NIELSEN, T., TREMAROLI, V., JI, B., PRIFTI, E., MYRIDAKIS, A., CHILLOUX, J., ANDRIKOPOULOS, P., OLANIPEKUN, M., ALVES, R., ADIOUCH, S., BAR, N., TALMOR-BARKAN, Y., BELDA, E., FAN, Y., CAESAR, R., PEDRO COELHO, L., FALONY, G., FELLAHI, S., GALAN, P., GALLERON, N., HELFT, G., HOYLES, L., ISNARD, R., LE CHATELIER, E., JULIENNE, H., OLSSON, L., PEDERSEN, H., PONS, N., QUINQUIS, B., ROUAULT, C., ROUME, H., SALEM, J.-E., SCHMIDT, T., LI, P., ZIMMERMANN-KOGADEEVA, M., LEWINTER, C., NADJA SONDERTOFT, M., HANSEN, T., GAUGUIER, D., GØTZE, J., KØBER, L., KORNOWSKI, R., VESTERGAARD, H., HANSEN, T., ZUCKER, J.-D., HERCBER, S., LETUNIC, I., BÄCKHED, F., OPPERT, J.-M., NIELSEN, J., RAES, J., BORK, P., STUMVOLL, M., SEGAL, E., DUMAS, M.-E., CLÉMENT, K., EHRLICH, S., VIEIRA-SILVA, S. and METACARDIS CONSORTIUM, 2022. Microbiome and metabolome features of the cardiometabolic disease spectrum. Nature Medicine. ISSN 1078-8956

MENGHINI, R., HOYLES, L., CARDELLINI, M., CASAGRANDE, V., MARINO, A., GENTILESCHI, P., DAVATO, F., CARDOLINI, I., ARISI, I., BARTON, R., RAPPA, F., CAPPELLO, F., VINCIGUERRA, M., ORTEGA, F., SERRANO, M., RICART, W., PORZIO, O., MAURIELLO, A., HOLMES, E., NICHOLSON, J., FERNANDEZ REAL, J., BURCELIN, R., DUMAS, M. and FEDERICI, M., 2022. ITCH E3 Ubiquitin Ligase downregulation compromises hepatic degradation of branched-chain amino acids. Molecular Metabolism: 101454. ISSN 2212-8778

CHAKRABARTI, A., GEURTS, L., HOYLES, L., IOZZO, P., KRANEVELD, A., LA FATA, G., MIANI, M., PATTERSON, E., POT, B., SHORTT, C. and VAUZOUR, D., 2022. The microbiota–gut–brain axis – pathways to better brain health: perspectives on what we know, what we need to investigate and how to put knowledge into practice. Cellular and Molecular Life Sciences, 79 (2): 80. ISSN 1420-682X

FORSLUND, S.K., CHAKAROUN, R., ZIMMERMANN-KOGADEEVA, M., MARKÓ, L., ARON-WISNEWSKY, J., NIELSEN, T., MOITINHO-SILVA, L., SCHMIDT, T.S.B., FALONY, G., VIEIRA-SILVA, S., ADRIOUCH, S., ALVES, R.J., ASSMANN, K., BASTARD, J.-P., BIRKNER, T., CAESAR, R., CHILLOUX, J., COELHO, L.P., FEZEU, L., GALLERON, N., HELFT, G., ISNARD, R., JI, B., KUHN, M., LE CHATELIER, E., MYRIDAKIS, A., OLSSON, L., PONS, N., PRIFTI, E., QUINQUIS, B., ROUME, H., SALEM, J.-E., SOKOLOVSKA, N., TREMAROLI, V., VALLES-COLOMER, M., LEWINTER, C., SØNDERTOFT, N.B., PEDERSEN, H.K., HANSEN, T.H., AMOUYAL, C., ANDERSSON GALIJATOVIC, E.A., ANDREELLI, F., BARTHELEMY, O., BATISSE, J.-P., BELDA, E., BERLAND, M., BITTAR, R., BLOTTIÈRE, H., BOSQUET, F., BOUBRIT, R., BOURRON, O., CAMUS, M., CASSUTO, D., CIANGURA, C., COLLET, J.-P., DAO, M.-C., DJEBBAR, M., DORÉ, A., ENGELBRECHTSEN, L., FELLAHI, S., FROMENTIN, S., GALAN, P., GAUGUIER, D., GIRAL, P., HARTEMANN, A., HARTMANN, B., HOLST, J.J., HORNBAK, M., HOYLES, L., HULOT, J.-S., JAQUEMINET, S., JØRGENSEN, N.R., JULIENNE, H., JUSTESEN, J., KAMMER, J., KRARUP, N., KERNEIS, M., KHEMIS, J., KOZLOWSKI, R., LEJARD, V., LEVENEZ, F., LUCAS-MARTINI, L., MASSEY, R., MARTINEZ-GILI, L., MAZIERS, N., MEDINA-STAMMINGER, J., MONTALESCOT, G., MOUTE, S., NEVES, A.L., OLANIPEKUN, M., LE PAVIN, L.P., POITOU, C., POUSSET, F., POUZOULET, L., RODRIGUEZ-MARTINEZ, A., ROUAULT, C., SILVAIN, J., SVENDSTRUP, M., SWARTZ, T., VANDUYVENBODEN, T., VATIER, C., WALTHER, S., GØTZE, J.P., KØBER, L., VESTERGAARD, H., HANSEN, T., ZUCKER, J.-D., HERCBERG, S., OPPERT, J.-M., LETUNIC, I., NIELSEN, J., BÄCKHED, F., EHRLICH, S.D., DUMAS, M.-E., RAES, J., PEDERSEN, O., CLÉMENT, K., STUMVOLL, M., BORK, P. and THE METACARDIS CONSORTIUM (HOYLES, L.), 2021. Combinatorial, additive and dose-dependent drug–microbiome associations. Nature. ISSN 0028-0836

HOYLES, L., PONTIFEX, M.G., RODRIGUEZ-RAMIRO, I., ANIS-ALAVI, M.A., JELANE, K.S., SNELLING, T., SOLITO, E., FONSECA, S., CARVALHO, A.L., CARDING, S.R., MÜLLER, M., GLEN, R.C., VAUZOUR, D. and MCARTHUR, S., 2021. Regulation of blood–brain barrier integrity by microbiome-associated methylamines and cognition by trimethylamine N-oxide. Microbiome, 9: 235. ISSN 2049-2618

NALPAS, N., HOYLES, L., ANSELM, V., GANIEF, T., MARTINEZ-GILI, L., GRAU, C., DROSTE-BOREL, I., DAVIDOVIC, L., ALTAFAJ, X., DUMAS, M.-E. and MACEK, B., 2021. An integrated workflow for enhanced taxonomic and functional coverage of the mouse faecal metaproteome. Gut Microbes, 13 (1): 1994836. ISSN 1949-0976

HSIEH, S.-Y., TARIQ, M., TELATIN, A., ANSORGE, R., ADRIAENSSENS, E., SAVVA, G., BOOTH, C., WILEMAN, T., HOYLES, L. and CARDING, S., 2021. Comparison of PCR versus PCR-free DNA library preparation for characterising the human faecal virome. Viruses, 13 (10): 2093. ISSN 1999-4915

VRIJHEID, M., BASAGAÑA, X., GONZALEZ, J.R., JADDOE, V.W.V., JENSEN, G., KEUN, H.C., MCEACHAN, R.R.C., PORCEL, J., SIROUX, V., SWERTZ, M.A., THOMSEN, C., AASVANG, G.M., ANDRUŠAITYTĖ, S., ANGELI, K., AVRAAM, D., BALLESTER, F., BURTON, P., BUSTAMANTE, M., CASAS, M., CHATZI, L., CHEVRIER, C., CINGOTTI, N., CONTI, D., CRÉPET, A., DADVAND, P., DUIJTS, L., VAN ENCKEVORT, E., ESPLUGUES, A., FOSSATI, S., GARLANTEZEC, R., GÓMEZ ROIG, M.D., GRAZULEVICIENE, R., GÜTZKOW, K.B., GUXENS, M., HAAKMA, S., HESSEL, E.V.S., HOYLES, L., HYDE, E., KLANOVA, J., VAN KLAVEREN, J.D., KORTENKAMP, A., LE BRUSQUET, L., LEENEN, I., LERTXUNDI, A., LERTXUNDI, N., LIONIS, C., LLOP, S., LOPEZ-ESPINOSA, M.-J., LYON-CAEN, S., MAITRE, L., MASON, D., MATHY, S., MAZARICO, E., NAWROT, T., NIEUWENHUIJSEN, M., ORTIZ, R., PEDERSEN, M., PERELLÓ, J., PÉREZ-CRUZ, M., PHILIPPAT, C., PILER, P., PIZZI, C., QUENTIN, J., RICHIARDI, L., RODRIGUEZ, A., ROUMELIOTAKI, T., SABIN CAPOTE, J.M., SANTIAGO, L., SANTOS, S., SISKOS, A.P., STRANDBERG-LARSEN, K., STRATAKIS, N., SUNYER, J., TENENHAUS, A., VAFEIADI, M., WILSON, R.C., WRIGHT, J., YANG, T. and SLAMA, R., 2021. Advancing tools for human early lifecourse exposome research and translation (ATHLETE): project overview. Environmental Epidemiology, 5 (5): e166. ISSN 2474-7882

SHIBU, P., MCCUAIG, F., MCCARTNEY, A.L., KUJAWSKA, M., HALL, L. and HOYLES, L., 2021. Improved molecular characterization of the Klebsiella oxytoca complex reveals the prevalence of the kleboxymycin biosynthetic gene cluster. Microbial Genomics, 7 (6): 000592. ISSN 2057-5858

BRIAL, F., CHILLOUX, J., NIELSEN, T., VIEIRA-SILVA, S., FALONY, G., ANDRIKOPOULOS, P., OLANIPEKUN, M., HOYLES, L., DJOUADI, F., NEVES, A.L., RODRIGUEZ-MARTINEZ, A., MOUAWAD, G.I., PONS, N., FORSLUND, S., LE-CHATELIER, E., LE LAY, A., NICHOLSON, J., HANSEN, T., HYÖTYLÄINEN, T., CLÉMENT, K., ORESIC, M., BORK, P., EHRLICH, S.D., RAES, J., PEDERSEN, O.B., GAUGUIER, D. and DUMAS, M.-E., 2021. Human and preclinical studies of the host-gut microbiome co-metabolite hippurate as a marker and mediator of metabolic health. Gut. ISSN 0017-5749

MAYNERIS-PERXACHS, J., CARDELLINI, M., HOYLES, L., LATORRE, J., DAVATO, F., MORENO-NAVARRETE, J.M., ARNORIAGA-RODRÍGUEZ, M., SERINO, M., ABBOTT, J., BARTON, R., PUIG, J., FERNANDEZ-REAL, X., RICART, W., TOMLINSON, C., WOODBRIDGE, M., GENTILESCHI, P., BUTCHER, S., HOLMES, E., NICHOLSON, J., PÉREZ-BROCAL, V., MOYA, A., MCCLAIN, D., BURCELIN, R., DUMAS, M.-E., FEDERICI, M. and FERNÁNDEZ-REAL, J.M., 2021. Iron status influences non-alcoholic fatty liver disease in obesity through the gut microbiome. Microbiome, 9: 104. ISSN 2049-2618

DILKE, S., DURANT, L., STENTZ, R., WILSON, A., TOZER, P., VAIZEY, C., HOYLES, L., CARDING, S., KNIGHT, S. and NOBLE, A., 2021. Direct manipulation of the intestinal microbiome to influence post‐operative outcomes. British Journal of Surgery, 108 (Supp_1): 08. ISSN 0007-1323

TARIQ, M.A., NEWBERRY, F., HAAGMANS, R., BOOTH, C., WILEMAN, T., HOYLES, L., CLOKIE, M.R., EBDON, J. and CARDING, S.R., 2020. Genome characterisation of a novel wastewater Bacteroides fragilis bacteriophage (vB_BfrS_23) and its host GB124. Frontiers in Microbiology, 11: 583378. ISSN 1664-302X

D'AMATO, A., DI CESARE-MANNELLI, L., LUCARINI, E., MAN, A.L., LE GALL, G., BRANCA, J.J.V., GHELARDINI, C., AMEDEI, A., BERTELLI, E., REGOLI, M., PACINI, A., LUCIANI, G., GALLINA, P., ALTERA, A., NARBAD, A., GULISANO, M., HOYLES, L., VAUZOUR, D. and NICOLETTI, C., 2020. Faecal microbiota transplant from aged donor mice affects spatial learning and memory via modulating hippocampal synaptic plasticity- and neurotransmission-related proteins in young recipients. Microbiome, 8: 140. ISSN 2049-2618

KUJAWSKA, M., LA ROSA, S.L., ROGER, L.C., POPE, P.B., HOYLES, L., MCCARTNEY, A.L. and HALL, L.J., 2020. Succession of Bifidobacterium longum strains in response to a changing early life nutritional environment reveals dietary substrate adaptations. iScience. ISSN 2589-0042

LETERTRE, M.P.M., MUNJOMA, N., WOLFER, K., PECHLIVANIS, A., MCDONALD, J.A.K., HARDWICK, R., CHERRINGTON, N.J., COEN, M., NICHOLSON, J.K., HOYLES, L., SWANN, J.R. and WILSON, I.D., 2020. A two-way interaction between methotrexate and the gut microbiota of male Sprague Dawley rats. Journal of Proteome Research. ISSN 1535-3893

DURANT, L., STENTZ, R., NOBLE, A., BROOKS, J., GICHEVA, N., REDDI, D., O'CONNOR, M.J., HOYLES, L., MCCARTNEY, A.L., MAN, R., PRING, E.T., DILKE, S., HENDY, P., SEGAL, J.P., LIM, D.N.F., MISRA, R., HART, A.L., AREBI, N., CARDING, S.R. and KNIGHT, S.C., 2020. Bacteroides thetaiotaomicron-derived outer membrane vesicles promote regulatory dendritic cell responses in health but not in inflammatory bowel disease. Microbiome, 8: 88. ISSN 2049-2618

CHEN, Y., BROOK, T., SOE, C.Z., O'NEILL, I., ALCON-GINER, C., LEELASTWATTANAGUL, O., PHILLIPS, S., CAIM, S., CLARKE, P., HALL, L. and HOYLES, L., 2020. Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors. Microbial Genomics. ISSN 2057-5858

MAYNERIS-PERXACHS, J., PUIG, J., BURCELIN, R., DUMAS, M.-E., BARTON, R.H., HOYLES, L., FEDERICI, M. and FERNÁNDEZ-REAL, J.-M., 2020. The APOA1BP-SREBF-NOTCH axis is associated with reduced atherosclerosis risk in morbidly obese patients. Clinical Nutrition. ISSN 0261-5614

HERRIDGE, W.P., SHIBU, P., O'SHEA, J., BROOK, T.C. and HOYLES, L., 2020. Bacteriophages of Klebsiella spp., their diversity and potential therapeutic uses. Journal of Medical Microbiology, 69 (2), pp. 176-194. ISSN 0022-2615

LEGGETT, R.M., ALCON-GINER, C., HEAVENS, D., CAIM, S., BROOK, T.C., KUJAWSKA, M., MARTIN, S., PEEL, N., ACKFORD-PALMER, H., HOYLES, L., CLARKE, P., HALL, L.J. and CLARK, M.D., 2019. Rapid MinION profiling of preterm microbiota and antimicrobial resistant pathogens. Nature Microbiology, 5 (3), pp. 430-442. ISSN 2058-5276

NOBLE, A., DURANT, L., HOYLES, L., MCCARTNEY, A.L., MAN, R., SEGAL, J., COSTELLO, S.P., HENDY, P., REDDI, D., BOURI, S., LIM, D.N.F., PRING, T., O'CONNOR, M.J., DATT, P., WILSON, A., AREBI, N., AKBAR, A., HART, A.L., CARDING, S.R. and KNIGHT, S.C., 2019. Deficient resident memory T-cell and CD8 T-cell response to commensals in inflammatory bowel disease. Journal of Crohn's and Colitis. ISSN 1873-9946

RANDALL, D.W., KIESWICH, J., SWANN, J., MCCAFFERTY, K., THIEMERMANN, C., CURTIS, M., HOYLES, L. and YAQOOB, M.M., 2019. Batch effect exerts a bigger influence on the rat urinary metabolome and gut microbiota than uraemia: a cautionary tale. Microbiome, 7: 127. ISSN 2049-2618

CHEN, Y., BROOK, T.C., ALCON-GINER, C., CLARKE, P., HALL, L.J. and HOYLES, L., 2019. Draft genome sequence of Raoultella ornithinolytica P079F W, isolated from the feces of a preterm infant. Microbiology Resource Announcements, 8 (33): e00493-19. ISSN 2576-098X

CHEN, Y., BROOK, T.C., ALCON-GINER, C., CLARKE, P., HALL, L.J., HOYLES, L. and DUNNING HOTOPP, J.C., 2019. Draft genome sequences of Citrobacter freundii and Citrobacter murliniae strains isolated from the feces of preterm infants. Microbiology Resource Announcements, 8 (33): e00494-19. ISSN 2576-098X

HOYLES, L., 2019. Spotlight on … Lesley Hoyles. FEMS Microbiology Letters, 366 (13): fnz156. ISSN 0378-1097

DAO, M.C., SOKOLOVSKA, N., BRAZEILLES, R., AFFELDT, S., PELLOUX, V., PRIFTI, E., CHILLOUX, J., VERGER, E.O., KAYSER, B., ARON-WISNEWSKY, J., ICHOU, F., PUJOS-GUILLOT, E., HOYLES, L., JUSTE, C., DORÉ, J., DUMAS, M.-E., RIZKALLA, S.W., HOLMES, B.A., ZUCKER, J.-D. and CLÉMENT, K., 2019. A data integration multi-omics approach to study calorie restriction-induced changes in insulin sensitivity. Frontiers in Physiology, 9: 1958. ISSN 1664-042X

HOYLES, L., 2019. Diversity of the class Coriobacteriia within different ecosystems. Access Microbiology, 1 (7).

HOYLES, L., BRIMAH, K. and GREENWELL, P., 2019. Whole-genome sequence analyses of Fusobacterium necrophorum. Access Microbiology, 1 (1A).

HOYLES, L., FERNÁNDEZ-REAL, J.-M., FEDERICI, M., SERINO, M., ABBOTT, J., CHARPENTIER, J., HEYMES, C., LUQUE, J.L., ANTHONY, E., BARTON, R.H., CHILLOUX, J., MYRIDAKIS, A., MARTINEZ-GILI, L., MORENO-NAVARRETE, J.M., BENHAMED, F., AZALBERT, V., BLASCO-BAQUE, V., PUIG, J., XIFRA, G., RICART, W., TOMLINSON, C., WOODBRIDGE, M., CARDELLINI, M., DAVATO, F., CARDOLINI, I., PORZIO, O., GENTILESCHI, P., LOPEZ, F., FOUFELLE, F., BUTCHER, S.A., HOLMES, E., NICHOLSON, J.K., POSTIC, C., BURCELIN, R. and DUMAS, M.-E., 2018. Molecular phenomics and metagenomics of hepatic steatosis in non-diabetic obese women. Nature Medicine, 24 (7), pp. 1070-1080. ISSN 1078-8956

HOYLES, L., JIMÉNEZ-PRANTEDA, M.L., CHILLOUX, J., BRIAL, F., MYRIDAKIS, A., ARANIAS, T., MAGNAN, C., GIBSON, G.R., SANDERSON, J.D., NICHOLSON, J.K., GAUGUIER, D., MCCARTNEY, A.L. and DUMAS, M.-E., 2018. Metabolic retroconversion of trimethylamine N-oxide and the gut microbiota. Microbiome, 6: 73. ISSN 2049-2618

HOYLES, L., SNELLING, T., UMLAI, U.-K., NICHOLSON, J.K., CARDING, S.R., GLEN, R.C. and MCARTHUR, S., 2018. Microbiome–host systems interactions: protective effects of propionate upon the blood–brain barrier. Microbiome, 6: 55. ISSN 2049-2618

CARDING, S.R., DAVIS, N. and HOYLES, L., 2017. Review article: the human intestinal virome in health and disease. Alimentary Pharmacology and Therapeutics (AP&T), 46 (9), pp. 800-815. ISSN 0269-2813

DUMAS, M.-E., ROTHWELL, A.R., HOYLES, L., ARANIAS, T., CHILLOUX, J., CALDERARI, S., NOLL, E.M., PÉAN, N., BOULANGÉ, C.L., BLANCHER, C., BARTON, R.H., GU, Q., FEARNSIDE, J.F., DESHAYES, C., HUE, C., SCOTT, J., NICHOLSON, J.K. and GAUGUIER, D., 2017. Microbial-host co-metabolites are prodromal markers predicting phenotypic heterogeneity in behavior, obesity, and impaired glucose tolerance. Cell Reports, 20 (1), pp. 136-148. ISSN 2211-1247

BELL, M.E., LASKER, B.A., KLENK, H.-P., HOYLES, L., SPRÖER, C., SCHUMANN, P. and BROWN, J.M., 2016. Kroppenstedtia pulmonis sp. nov. and Kroppenstedtia sanguinis sp. nov., isolated from human patients. Antonie van Leeuwenhoek, 109 (5), pp. 603-610. ISSN 0003-6072

DAO, M.C., EVERARD, A., ARON-WISNEWSKY, J., SOKOLOVSKA, N., PRIFTI, E., VERGER, E.O., KAYSER, B.D., LEVENEZ, F., CHILLOUX, J., HOYLES, L., MICRO-OBES CONSORTIUM, DUMAS, M.-E., RIZKALLA, S.W., DORE, J., CANI, P.D. and CLÉMENT, K., 2016. Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology. Gut, 65 (3), pp. 426-436. ISSN 0017-5749

SHOAIE, S., GHAFFARI, P., KOVATCHEVA-DATCHARY, P., MARDINOGLU, A., SEN, P., PUJOS-GUILLOT, E., DE WOUTERS, T., JUSTE, C., RIZKALLA, S., CHILLOUX, J., HOYLES, L., NICHOLSON, J.K., MICRO-OBES CONSORTIUM, DORE, J., DUMAS, M.E., CLEMENT, K., BÄCKHED, F. and NIELSEN, J., 2015. Quantifying diet-induced metabolic changes of the human gut microbiome. Cell Metabolism, 22 (2), pp. 320-331. ISSN 1550-4131

HOYLES, L., MURPHY, J., NEVE, H., HELLER, K.J., TURTON, J.F., MAHONY, J., SANDERSON, J.D., HUDSPITH, B., GIBSON, G.R., MCCARTNEY, A.L. and VAN SINDEREN, D., 2015. Klebsiella pneumoniae subsp. pneumoniae–bacteriophage combination from the caecal effluent of a healthy woman. PeerJ, 3, e1061. ISSN 2167-8359

THORASIN, T., HOYLES, L. and MCCARTNEY, A.L., 2015. Dynamics and diversity of the ‘Atopobium cluster' in the human faecal microbiota, and phenotypic characterization of ‘Atopobium cluster' isolates. Microbiology, 161 (3), pp. 565-579. ISSN 1350-0872

HOYLES, L., MCCARTNEY, A.L., NEVE, H., GIBSON, G.R., SANDERSON, J.D., HELLER, K.J. and VAN SINDEREN, D., 2014. Characterization of virus-like particles associated with the human faecal and caecal microbiota. Research in Microbiology, 165 (10), pp. 803-812. ISSN 0923-2508

Chapter in book

HOYLES, L., 2023. Gut microbiome and hepatic steatosis (steatotic liver disease). In: M. FEDERICI and R. MENGHINI, eds., Gut microbiome, microbial metabolites and cardiometabolic risk. Endocrinology . Cham: Springer. ISBN 9783031081156

HOYLES, L. and WALLACE, R.J., 2019. Gastrointestinal tract: fat metabolism in the colon. In: H. GOLDFINE, ed., Health consequences of microbial interactions with hydrocarbons, oils, and lipids. Handbook of hydrocarbon and lipid microbiology . Cham: Springer. ISBN 9783319724737

HOYLES, L. and WALLACE, R.J., 2019. Gastrointestinal tract: intestinal fatty acid metabolism and implications for health. In: H. GOLDFINE, ed., Health consequences of microbial interactions with hydrocarbons, oils, and lipids. Handbook of hydrocarbon and lipid microbiology . Cham: Springer. ISBN 9783319724737

HOYLES, L. and SWANN, J., 2019. Influence of the human gut microbiome on the metabolic phenotype. In: J.C. LINDON, J.K. NICHOLSON and E. HOLMES, eds., The handbook of metabolic phenotyping. Elsevier, pp. 535-560. ISBN 9780128122938

Conference contribution

DAWSON, S. and HOYLES, L., 2021. Bioinformatic exploration of trimethylamine N-oxide metabolism in human gut bacteria. In: Microbiology Society Annual Conference Online 2021, Online, 26-30 April 2021.

COX, M., CARNEY, S., HOYLES, L., ROY, S., WILLIAMS, R., BREUER, J., CHALKER, V. and MOFFATT, M., 2020. Legionella pneumophila typing by direct sequencing of clinical and environmental samples. In: American Thoracic Society 2020 International Conference, Philadelphia, Pennsylvania, United States, 15-20 May 2020.

DAWSON, S., MCLEAN, S. and HOYLES, L., 2020. Effects of trimethylamine N-oxide on the growth and metabolism of gut bacteria. In: Microbiology Society Annual Conference 2020 [cancelled], Edinburgh, 30 March - 3 April 2020.

MCCUAIG, F., WINTER, J., THOMAS, J., MCVICKER, G. and HOYLES, L., 2020. Genotypic and phenotypic characterisation of the Klebsiella oxytoca complex. In: Microbiology Society Annual Conference 2020 [cancelled], Edinburgh, 30 March - 3 April 2020.

Other

KUJAWSKA, M., LA ROSA, S.L., POPE, P.B., HOYLES, L., MCCARTNEY, A.L. and HALL, L.J., 2020. Succession of Bifidobacterium longum strains in response to the changing early-life nutritional environment reveals specific adaptations to distinct dietary substrates. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory. (Submitted)

D’AMATO, A., DI CESARE-MANNELLI, L., LUCARINI, E., MAN, A.L., LE GALL, G., BRANCA, J.J.V., GHELARDINI, C., AMEDEI, A., BERTELLI, E., REGOLI, M., PACINI, A., LUCIANI, G., GALLINA, P., ALTERA, A., NARBAD, A., GULISANO, M., HOYLES, L., VAUZOUR, D. and NICOLETTI, C., 2019. Faecal microbiota transplant from aged donor mice into young recipients affects spatial learning and memory. Cold Spring Harbor Laboratory. (Submitted)

CHEN, Y., BROOK, T.C., SOE, C.Z., O’NEILL, I., ALCON-GINER, C., LEELASTWATTANAGUL, O., PHILLIPS, S., CAIM, S., CLARKE, P., HALL, L.J. and HOYLES, L., 2019. Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors. Cold Spring Harbor Laboratory. (Submitted)

NEVES, A.L., RODRIGUEZ-MARTINEZ, A., AYALA, R., POSMA, J.M., ABELLONA U, M., CHILLOUX, J., NICHOLSON, J.K., DUMAS, M.-E. and HOYLES, L., 2019. A network-based data-mining approach to investigate indole-related microbiota-host co-metabolism. Cold Spring Harbor Laboratory. (Submitted)