Items where Author is "Crofts, JJ"

Journal article

ALMANSOUR, S., DUNSTER, J.L., CROFTS, J.J. and NELSON, M.R., 2024. Modelling the continuum of macrophage phenotypes and their role in inflammation. Mathematical Biosciences, 377: 109289. ISSN 0025-5564

ALMANSOUR, S., DUNSTER, J.L., CROFTS, J.J. and NELSON, M.R., 2024. A systematic evaluation of the influence of macrophage phenotype descriptions on inflammatory dynamics. Mathematical Medicine and Biology. ISSN 1477-8599

PINDER, I., NELSON, M.R. and CROFTS, J.J., 2023. Bifurcations and synchrony in a ring of delayed Wilson–Cowan oscillators. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 479 (2278): 20230313. ISSN 1364-5021

BATTEN, D.J., CROFTS, J.J. and CHUZHANOVA, N., 2023. Towards In Silico identification of genes contributing to similarity of patients’ multi-omics profiles: a case study of acute myeloid leukemia. Genes, 14 (9): 1795.

CROFTS, J.J., FORRESTER, M., COOMBES, S. and O’DEA, R.D., 2022. Structure-function clustering in weighted brain networks. Scientific Reports, 12: 16793. ISSN 2045-2322

CROFTS, J.J., CHUZHANOVA, N., PADMORE, A. and NELSON, M.R., 2022. Synchrony in directed connectomes. EPL, 139 (4): 42004. ISSN 0295-5075

CHAPPELL, D., CROFTS, J.J., RICHTER, M. and TANNER, G., 2021. A direction preserving discretization for computing phase-space densities. SIAM Journal on Scientific Computing, 43 (4), B884-B906. ISSN 1064-8275

BAYANI, A., DUNSTER, J.L., CROFTS, J.J. and NELSON, M.R., 2020. Spatial considerations in the resolution of inflammation: elucidating leukocyte interactions via an experimentally-calibrated agent-based model. PLOS Computational Biology, 16 (11): e1008413. ISSN 1553-734X

FORRESTER, M., CROFTS, J.J., SOTIROPOULOS, S.N., COOMBES, S. and O'DEA, R.D., 2020. The role of node dynamics in shaping emergent functional connectivity patterns in the brain. Network Neuroscience, 4 (2), pp. 467-483. ISSN 2472-1751

BAYANI, A., DUNSTER, J.L., CROFTS, J.J. and NELSON, M.R., 2020. Mechanisms and points of control in the spread of inflammation: a mathematical investigation. Bulletin of Mathematical Biology, 82 (4): 45. ISSN 0092-8240

PADMORE, A., NELSON, M.R., CHUZHANOVA, N. and CROFTS, J.J., 2020. Modelling the impact of structural directionality on connectome-based models of neural activity. Journal of Complex Networks, 8 (4): cnaa033. ISSN 2051-1310

BUXTON, D.S., BATTEN, D.J., CROFTS, J.J. and CHUZHANOVA, N., 2019. Predicting novel genomic regions linked to genetic disorders using GWAS and chromosome conformation data - a case study of schizophrenia. Scientific Reports, 9: 17940. ISSN 2045-2322

MARTIN, R., CHAPPELL, D.J., CHUZHANOVA, N. and CROFTS, J.J., 2018. A numerical simulation of neural fields on curved geometries. Journal of Computational Neuroscience. ISSN 0929-5313

BEDWELL, S.A., BILLETT, E.E., CROFTS, J.J. and TINSLEY, C.J., 2017. Differences in anatomical connections across distinct areas in the rodent prefrontal cortex. European Journal of Neuroscience, 45 (6), pp. 859-873. ISSN 0953-816X

CROFTS, J.J., FORRESTER, M. and O'DEA, R.D., 2016. Structure-function clustering in multiplex brain networks. EPL (Europhysics Letters): a Letters Journal Exploring the Frontiers of Physics, 116 (1), p. 18003. ISSN 0295-5075

PEARCY, N., CHUZHANOVA, N. and CROFTS, J.J., 2016. Complexity and robustness in hypernetwork models of metabolism. Journal of Theoretical Biology, 406, pp. 99-104. ISSN 0022-5193

LO, Y.-P., O’DEA, R., CROFTS, J.J., HAN, C.E. and KAISER, M., 2015. A geometric network model of intrinsic grey-matter connectivity of the human brain. Scientific Reports, 5: 15397. ISSN 2045-2322

PEARCY, N., CROFTS, J.J. and CHUZHANOVA, N., 2015. Network motif frequency vectors reveal evolving metabolic network organisation. Molecular BioSystems, 11 (1), pp. 77-85. ISSN 1742-206X

BEDWELL, S.A., BILLETT, E.E., CROFTS, J.J., MACDONALD, D.M. and TINSLEY, C.J., 2015. The topology of connections between rat prefrontal and temporal cortices. Frontiers in Systems Neuroscience, 9. ISSN 1662-5137

PEARCY, N., CROFTS, J.J. and CHUZHANOVA, N., 2014. Hypergraph models of metabolism. International Journal of Biological, Veterinary, Agricultural and Food Engineering, 8 (8), pp. 752-756.

CROFTS, J.J. and ESTRADA, E., 2014. A statistical mechanics description of environmental variability in metabolic networks. Journal of Mathematical Chemistry, 52 (2), pp. 675-688. ISSN 0259-9791

BEDWELL, S.A., BILLETT, E.E., CROFTS, J.J. and TINSLEY, C.J., 2014. The topology of connections between rat prefrontal, motor and sensory cortices. Frontiers in Systems Neuroscience. ISSN 1662-5137

O'DEA, R., CROFTS, J.J. and KAISER, M., 2013. Spreading dynamics on spatially constrained complex brain networks. Journal of the Royal Society Interface, 10 (81). ISSN 1742-5689

CROFTS, J.J. and HIGHAM, D.J., 2011. Googling the brain: discovering hierarchical and asymmetric network structures, with applications in neuroscience. Internet Mathematics, 7 (4), pp. 233-254. ISSN 1542-7951

CROFTS, J.J., HIGHAM, D.J., BOSNELL, R., JBABDI, S., MATTHEWS, P.M., BEHRENS, T.E.J. and JOHANSEN-BERG, H., 2011. Network analysis detects changes in the contralesional hemisphere following stroke. NeuroImage, 54 (1), pp. 161-169. ISSN 1053-8119

CROFTS, J.J., ESTRADA, E., HIGHAM, D.J. and TAYLOR, A., 2010. Mapping directed networks. Electronic Transactions in Numerical Analysis, 37, pp. 337-350. ISSN 1068-9613

CROFTS, J.J. and DAVIDCHACK, R.L., 2009. On the use of stabilizing transformations for detecting unstable periodic orbits in high-dimensional flows. Chaos, 19 (3), p. 33138. ISSN 1054-1500

CROFTS, J.J. and HIGHAM, D.J., 2009. A weighted communicability measure applied to complex brain networks. Journal of the Royal Society Interface, 6 (3), pp. 411-414. ISSN 1742-5662

CROFTS, J.J. and DAVIDCHACK, R.L., 2006. Efficient detection of periodic orbits in chaotic systems by stabilising transformations. SIAM Journal on Scientific Computing, 28 (4), pp. 1275-1288. ISSN 1064-8275

Chapter in book

PINDER, I. and CROFTS, J.J., 2021. Oscillations and synchrony in a network of delayed neural masses. In: A. BANDYOPADHYAY and K. RAY, eds., Rhythmic oscillations in proteins to human cognition. Studies in rhythm engineering . Springer, Singapore, pp. 187-211. ISBN 9789811572524

MARTIN, R., CHAPPELL, D.J., CHUZHANOVA, N. and CROFTS, J.J., 2017. Can linear collocation ever beat quadratic? In: D.J. CHAPPELL, ed., Proceedings of the Eleventh UK Conference on Boundary Integral Methods (UKBIM 11), 10-11 July 2017, Nottingham Conference Centre, Nottingham Trent University. Nottingham: Nottingham Trent University: Publications, pp. 117-124. ISBN 9780993111297

Conference contribution

CROFTS, J.J., SØNDERGAARD, N. and CHAPPELL, D.J., 2016. Tracking vibrational energy on curved shell structures of variable thickness in the mid-to-high frequency - a ray tracing approach. In: International Conference on Noise and Vibration Engineering (ISMA 2016), Leuven, Belgium, 19-21 September 2016. (Forthcoming)

CROFTS, J.J. and DAVIDCHAK, R.L., 2005. Efficient detection of periodic orbits in high dimensional systems. In: ICNAAM 2005.